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[181498_s_at]

Description Y48B6A.6 /REP_DB=WormBase Gene ID /WP=CE22121 /TR=Q9U2A6 /GB=CAB54442.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 60      6grp_total > 25      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 250
1 2 3 4 range
A 363.9
(3)
P 		229.1
(-0.8)
P 		148.4
(-3)
P 		335.3
(2.2)
P 		216
B 366.1
(2.2)
P 		215
(-1.4)
P 		149.2
(-3)
P 		398
(3)
P 		249
C 382.7
(3)
P 		172.1
(-3)
P 		183
(-2.7)
P 		335
(1.6)
P 		211
avr 370.9
(3) 		205.4
(-1.7) 		160.2
(-3) 		356.1
(2.6) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 471
1 2 3 4 5 6 range
A 394.1
(2.2)
P 		430.7
(3)
P 		335.3
(0.9)
P 		266.6
(-0.5)
P 		151.9
(-3)
P 		276.1
(-0.3)
P 		279
B 525.9
(3)
P 		487.6
(2.3)
P 		346.4
(-0.2)
P 		224
(-2.4)
P 		190.2
(-3)
P 		327.7
(-0.5)
P 		336
C 622.8
(3)
P 		449.8
(0.4)
P 		275.1
(-2.1)
P 		227.7
(-2.8)
P 		217.4
(-3)
P 		270.5
(-2.2)
P 		405
avr 514.3
(3) 		456
(1.9) 		318.9
(-0.6) 		239.4
(-2) 		186.5
(-3) 		291.4
(-1.1) 		328
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 132.5
(3)
P 		49.7
(-2.3)
P 		38.8
(-3)
P 		49.1
(-2.3)
P 		94
B 116.7
(3)
P 		53.1
(-1.6)
P 		34.6
(-3)
P 		84.8
(0.7)
P 		82
C 126.7
(3)
P 		49.5
(-3)
P 		63.8
(-1.9)
P 		56.5
(-2.5)
P 		77
avr 125.3
(3) 		50.8
(-2.6) 		45.7
(-3) 		63.5
(-1.7) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 72.7
(-1.5)
P 		153.2
(3)
P 		73
(-1.5)
P 		67.6
(-1.8)
P 		45.8
(-3)
P 		67.2
(-1.8)
P 		107
B 183
(3)
P 		162.3
(2)
P 		84.1
(-1.8)
P 		59.3
(-3)
P 		77.3
(-2.1)
P 		122.2
(0.1)
P 		124
C 230.8
(3)
P 		137.2
(-0)
P 		70
(-2.2)
P 		45.8
(-3)
P 		70.3
(-2.2)
P 		90.6
(-1.5)
P 		185
avr 162.2
(3) 		150.9
(2.4) 		75.7
(-2) 		57.6
(-3) 		64.5
(-2.6) 		93.3
(-1) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181498_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3378
Sequence Type Exemplar sequence
Representative Public ID Y48B6A.6 NCBI
Target Description Y48B6A.6 /REP_DB=WormBase Gene ID /WP=CE22121 /TR=Q9U2A6 /GB=CAB54442.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064560(10), NM_182166(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064560 NCBI Caenorhabditis elegans Y48B6A.6a (Y48B6A.6) mRNA, complete cds. 10/11 None
NM_182166 NCBI Caenorhabditis elegans Y48B6A.6b (Y48B6A.6) mRNA, complete cds. 9/11 None
SNAP00000022961 ENSEMBL cdna:SNAP chromosome:CEL140:II:14187773:14189541:1 10/11 None
GENEFINDER00000022981 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14180156:14189113:1 11/11 None
Y48B6A.6a.1 ENSEMBL cdna:known chromosome:CEL140:II:14178705:14189759:1 gene:Y48B6A.6 10/11 None
Y48B6A.6a.2 ENSEMBL cdna:known chromosome:CEL140:II:14180150:14189759:1 gene:Y48B6A.6 10/11 None
Y48B6A.6b ENSEMBL cdna:known chromosome:CEL140:II:14180156:14188162:1 gene:Y48B6A.6 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14180152-14189538(+) 95.44 100.0
Public Domain and Genome References
Ensembl Y48B6A.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54442 Hypothetical protein Y48B6A.6a [Caenorhabditis elegans] ref|NP_496961.2| Y48B6A.6a [Caenorhabditis elegans] 0.0
blast CAD59175 Hypothetical protein Y48B6A.6b [Caenorhabditis elegans] ref|NP_871966.1| Y48B6A.6b [Caenorhabditis elegans] 1.0E-178
blast CAD59175 Hypothetical protein Y48B6A.6b [Caenorhabditis elegans] ref|NP_871966.1| Y48B6A.6b [Caenorhabditis elegans] 1.0E-175
blast CAD59175 Hypothetical protein Y48B6A.6b [Caenorhabditis elegans] ref|NP_871966.1| Y48B6A.6b [Caenorhabditis elegans] 1.0E-169
blast CAB54442 Hypothetical protein Y48B6A.6a [Caenorhabditis elegans] ref|NP_496961.2| Y48B6A.6a [Caenorhabditis elegans] 1.0E-169
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.0E-6
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 3.2E-5
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.0E-6
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 3.2E-5
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.0E-6
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 3.2E-5
Sequence
Target Sequence 
>C. ELEGANS:181498_S_AT
aaactgctcttttgactttctgaatgataaacgttcaggcgagaatgttccgttgaagat
gaacaagaagatctcactgtacgccgagttcagcgagttctcacgcaagcagattcagta
cttcagtggcattttcaagaaatacgatgaggatcaggatagttatatcgatttcaatga
gcttaaacgaatgatggaaaagctcggagaagcgcagactcatattgcgttgaaggagtt
gattaagaaggttgatgaagatcaagacggcaaaatttcgcagcgagagtttttcctgat
cttcagattggcggccagtggagaattgtcgtgctcggaagtgttcaagacgctcgcaga
aagtgttgatgtctccaaggaaggtgtactcggggcagcaaactttttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTGCTCTTTTGACTTTCTGAAT 439 127 1614 Antisense
AGAAGATCTCACTGTACGCCGAGTT 278 75 1679 Antisense
GAGTTCAGCGAGTTCTCACGCAAGC 225 399 1699 Antisense
GATTCAGTACTTCAGTGGCATTTTC 214 431 1725 Antisense
AAGACGGCAAAATTTCGCAGCGAGA 698 153 1877 Antisense
GCAGCGAGAGTTTTTCCTGATCTTC 217 315 1893 Antisense
CCTGATCTTCAGATTGGCGGCCAGT 137 267 1908 Antisense
GGCGGCCAGTGGAGAATTGTCGTGC 93 541 1923 Antisense
GAAGTGTTCAAGACGCTCGCAGAAA 673 335 1951 Antisense
GTCTCCAAGGAAGGTGTACTCGGGG 64 471 1984 Antisense
TACTCGGGGCAGCAAACTTTTTCCA 26 643 2000 Antisense
Sequence Source Affymetrix Proprietary Database