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[181497_at]

Description C09B9.2 /REP_DB=WormBase Gene ID /WP=CE06794 /TR=Q17852 /GB=AAB37558.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 30      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 39.2
(1.7)
A 		40.6
(2.3)
A 		27.6
(-3)
A 		42.4
(3)
A 		15
B 46.9
(3)
A 		9.7
(-2.3)
A 		4.8
(-3)
A 		10.8
(-2.1)
A 		42
C 62.2
(3)
A 		30.9
(-2.2)
A 		26.1
(-3)
A 		49.7
(0.9)
A 		36
avr 49.4
(3) 		27.1
(-1.5) 		19.5
(-3) 		34.3
(-0) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 43.1
(-1.1)
A 		4.6
(-3)
A 		24.8
(-2)
A 		12.8
(-2.6)
A 		113.9
(2.4)
A 		125.5
(3)
A 		121
B 27.2
(-2.8)
A 		21.9
(-3)
A 		34.6
(-2.4)
A 		41.4
(-2.2)
A 		133.8
(1.8)
P 		160.4
(3)
P 		139
C 8.1
(-3)
A 		57.1
(-1)
A 		8.6
(-3)
A 		51.9
(-1.2)
A 		120.3
(1.7)
A 		152.5
(3)
P 		144
avr 26.1
(-2.8) 		27.9
(-2.7) 		22.7
(-3) 		35.4
(-2.4) 		122.7
(1.9) 		146.1
(3) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 14.3
(3)
A 		8.8
(-1.1)
A 		7.2
(-2.3)
A 		6.2
(-3)
A 		8
B 14.9
(3)
A 		2.4
(-2.4)
A 		1.1
(-3)
A 		2.3
(-2.5)
A 		14
C 20.6
(3)
A 		8.9
(-2.8)
A 		9.1
(-2.7)
A 		8.4
(-3)
A 		12
avr 16.6
(3) 		6.7
(-2.4) 		5.8
(-2.9) 		5.6
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 7.9
(-1.8)
A 		1.6
(-3)
A 		5.4
(-2.3)
A 		3.3
(-2.7)
A 		34.4
(3)
A 		30.6
(2.3)
A 		33
B 9.5
(-2.7)
A 		7.3
(-3)
A 		8.4
(-2.9)
A 		11
(-2.6)
A 		54.4
(2.4)
P 		59.8
(3)
P 		53
C 3
(-2.9)
A 		17.4
(-1.1)
A 		2.2
(-3)
A 		10.4
(-2)
A 		38.9
(1.5)
A 		51.1
(3)
P 		49
avr 6.8
(-2.8) 		8.8
(-2.5) 		5.3
(-3) 		8.2
(-2.6) 		42.6
(2.3) 		47.2
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181497_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10965
Sequence Type Exemplar sequence
Representative Public ID C09B9.2 NCBI
Target Description C09B9.2 /REP_DB=WormBase Gene ID /WP=CE06794 /TR=Q17852 /GB=AAB37558.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068306(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068306 NCBI Caenorhabditis elegans C09B9.2 (C09B9.2) mRNA, complete cds. 11/11 None
SNAP00000007228 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5029290:5030996:1 11/11 None
GENEFINDER00000007234 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5029290:5030996:1 11/11 None
C09B9.2 ENSEMBL cdna:known chromosome:CEL140:IV:5029290:5030996:1 gene:C09B9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5029295-5031002(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09B9.2
Entrez Gene 182442 Entrez gene
SwissProt Q17852 EMBL-EBI
WormBase CE06794 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37558 Hypothetical protein C09B9.2 [Caenorhabditis elegans] ref|NP_500707.1| C09B9.2 [Caenorhabditis elegans] 1.0E-158
blast CAE71800 Hypothetical protein CBG18811 [Caenorhabditis briggsae] 2.0E-58
blast CAB70241 Hypothetical protein F58D5.8 [Caenorhabditis elegans] emb|CAC15866.1| Hypothetical protein F58D5.8 [Caenorhabditis elegans] ref|NP_493043.1| F58D5.8 [Caenorhabditis elegans] 2.0E-29
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500707.1 4 65-87,97-116,123-145,160-182
C09B9.2 4 65-87,97-116,123-145,160-182
SNAP00000007228 4 65-87,97-116,123-145,160-182
GENEFINDER00000007234 4 65-87,97-116,123-145,160-182
Sequence
Target Sequence 
>C. ELEGANS:181497_AT
ttttctctcttaccattttgttctgcttttcctcatgttttctttctttctccagtccag
tttctcatcaaaaagtcggttcgttgagcaaatcttcggaatgtcggcagtatcttctat
gtcaacgtgtgctcattttattatcgttgtcaatgcggtgcaaatgattgcaaagtctaa
gaaacgaaatgactatggtgaaaaagtgattgtggaggacgtggataagcggagaaaaga
tttgtatttgatgattagtgacttgatcagcgagatttgttttgatgataaggattcgaa
gctccacctcactatcaaagacgaaacaggccgcccgaaaacaatgagtggagccggaat
cgaagccggagtgagccgtgttcttgaaatgagcatggacggggataaggtcagcctatc
gactagcaataccactcaggcctgcattcatgttccaaattcttccaagaaacacaagaa
acgtggaagccgcagccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTCTCTTACCATTTTGTTCTG 416 677 399 Antisense
GTCGGTTCGTTGAGCAAATCTTCGG 308 471 473 Antisense
ATCTTCGGAATGTCGGCAGTATCTT 286 31 490 Antisense
GTATCTTCTATGTCAACGTGTGCTC 67 455 508 Antisense
GTGTGCTCATTTTATTATCGTTGTC 673 487 525 Antisense
GATAAGGATTCGAAGCTCCACCTCA 492 421 685 Antisense
TCAAAGACGAAACAGGCCGCCCGAA 221 627 713 Antisense
GAAGCCGGAGTGAGCCGTGTTCTTG 605 343 760 Antisense
ATCGACTAGCAATACCACTCAGGCC 698 35 816 Antisense
AGGCCTGCATTCATGTTCCAAATTC 494 51 836 Antisense
CAAGAAACGTGGAAGCCGCAGCCGG 658 183 873 Antisense
Sequence Source Affymetrix Proprietary Database