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[181496_at] 7TM chemoreceptor, sri family

Description C41G6.14 /REP_DB=WormBase Gene ID /WP=CE23588 /TR=Q9U3M4 /GB=CAB60283.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 28      6grp_total_sub > Hat      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 54
(-1.7)
A 		85.9
(0.5)
A 		35.8
(-3)
A 		121.1
(3)
A 		85
B 58.1
(3)
A 		46.6
(-0.5)
A 		38.3
(-3)
A 		44.5
(-1.1)
A 		20
C 51.5
(0.7)
A 		67.8
(3)
M 		24.9
(-3)
A 		62.8
(2.3)
A 		43
avr 54.5
(-0) 		66.8
(1.7) 		33
(-3) 		76.1
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 22.9
(-3)
A 		30.1
(-2.4)
A 		48
(-0.8)
A 		43
(-1.2)
A 		91.3
(3)
A 		75.3
(1.6)
A 		68
B 31.5
(-1.1)
A 		70.5
(2.6)
A 		38.9
(-0.4)
A 		74.2
(3)
A 		37.3
(-0.6)
A 		12.2
(-3)
A 		62
C 61.4
(0.6)
A 		80.9
(3)
A 		33
(-3)
A 		47
(-1.2)
A 		39.9
(-2.1)
A 		74.5
(2.2)
A 		48
avr 38.6
(-3) 		60.5
(3) 		40
(-2.6) 		54.7
(1.4) 		56.2
(1.8) 		54
(1.2) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 19.7
(3)
A 		18.7
(2.4)
A 		9.4
(-3)
A 		17.7
(1.8)
A 		10
B 18.5
(3)
A 		11.5
(-1.4)
A 		8.9
(-3)
A 		9.5
(-2.6)
A 		10
C 17.1
(1.7)
A 		19.5
(3)
M 		8.7
(-3)
A 		10.6
(-1.9)
A 		11
avr 18.4
(3) 		16.6
(1.9) 		9
(-3) 		12.6
(-0.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 4.2
(-3)
A 		10.7
(-1.3)
A 		10.4
(-1.4)
A 		10.9
(-1.3)
A 		27.6
(3)
A 		18.3
(0.6)
A 		23
B 11
(-0.9)
A 		23.5
(3)
A 		9.4
(-1.5)
A 		19.7
(1.8)
A 		15.2
(0.4)
A 		4.5
(-3)
A 		19
C 22.8
(2.2)
A 		24.7
(2.9)
A 		8.4
(-3)
A 		9.4
(-2.6)
A 		12.9
(-1.4)
A 		24.9
(3)
A 		17
avr 12.7
(-1.1) 		19.6
(3) 		9.4
(-3) 		13.3
(-0.7) 		18.6
(2.4) 		15.9
(0.8) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181496_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12767
Sequence Type Exemplar sequence
Representative Public ID C41G6.14 NCBI
Target Description C41G6.14 /REP_DB=WormBase Gene ID /WP=CE23588 /TR=Q9U3M4 /GB=CAB60283.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074358(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074358 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-26) (sri-26) mRNA, complete cds. 11/11 None
SNAP00000010435 ENSEMBL cdna:SNAP chromosome:CEL140:V:15218637:15219475:1 11/11 None
C41G6.14 ENSEMBL cdna:known chromosome:CEL140:V:15218188:15219475:1 gene:C41G6.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010446 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15218187-15219475(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-26
Ensembl C41G6.14
Entrez Gene 183389 Entrez gene
SwissProt Q9U3M4 EMBL-EBI
WormBase CE23588 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60283 Hypothetical protein C41G6.14 [Caenorhabditis elegans] ref|NP_506759.1| Serpentine Receptor, class I family member (sri-26) [Caenorhabditis elegans] 1.0E-180
blast CAB02830 Hypothetical protein C41G6.10 [Caenorhabditis elegans] ref|NP_506760.1| Serpentine Receptor, class I family member (sri-25) [Caenorhabditis elegans] 1.0E-108
blast CAB60283 Hypothetical protein C41G6.14 [Caenorhabditis elegans] ref|NP_506759.1| Serpentine Receptor, class I family member (sri-26) [Caenorhabditis elegans] 1.0E-105
blast CAB02835 Hypothetical protein C41G6.11 [Caenorhabditis elegans] ref|NP_506758.1| Serpentine Receptor, class I family member (sri-24) [Caenorhabditis elegans] 6.0E-93
blast CAB02830 Hypothetical protein C41G6.10 [Caenorhabditis elegans] ref|NP_506760.1| Serpentine Receptor, class I family member (sri-25) [Caenorhabditis elegans] 3.0E-58
blast CAB02835 Hypothetical protein C41G6.11 [Caenorhabditis elegans] ref|NP_506758.1| Serpentine Receptor, class I family member (sri-24) [Caenorhabditis elegans] 2.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.1E-48
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506759.1 7 15-37,49-68,93-115,127-149,194-216,244-266,276-298
C41G6.14 7 15-37,49-68,93-115,127-149,194-216,244-266,276-298
SNAP00000010435 4 7-29,73-95,148-167,177-199
Sequence
Target Sequence 
>C. ELEGANS:181496_AT
attggatattctatttcccgcactctcgttcaagttcagaagtttaccagaatttcagta
ctatgctttcaacagctggatgatagcttttgtcacacaaactatgttcggaaccatgaa
atcatttgtattagtagtcattatggttattcaaatgtacagaacattaaaggaagttca
gtgtaaactatcgagcactacaattgcaaagcacaaatctgctctgaggagtttggttgc
tcagttttgcacaaccccaattgcaatgcttcccgctggaatcaccactttaacagtgct
tttccccagtcaatactctcaaaaagtatcctggtattgcatgatggtaatgacggccca
ctcgacaattaactcaatagttattattctcacttatcccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGATATTCTATTTCCCGCACTC 123 5 510 Antisense
CCGCACTCTCGTTCAAGTTCAGAAG 271 263 527 Antisense
GCTGGATGATAGCTTTTGTCACACA 255 295 584 Antisense
GGTTGCTCAGTTTTGCACAACCCCA 36 509 744 Antisense
GCACAACCCCAATTGCAATGCTTCC 212 317 758 Antisense
TTCCCGCTGGAATCACCACTTTAAC 641 693 779 Antisense
CCACTTTAACAGTGCTTTTCCCCAG 437 255 794 Antisense
TTTTCCCCAGTCAATACTCTCAAAA 629 677 809 Antisense
GCATGATGGTAATGACGGCCCACTC 394 309 848 Antisense
GGCCCACTCGACAATTAACTCAATA 203 543 864 Antisense
AGTTATTATTCTCACTTATCCCGAA 202 61 888 Antisense
Sequence Source Affymetrix Proprietary Database