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[181495_at]

Description K09B3.1 /REP_DB=WormBase Gene ID /WP=CE11984 /TR=Q94268 /GB=AAB09105.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 44.5
(-1.1)
A 		20.8
(-3)
A 		97.6
(3)
A 		76.4
(1.3)
A 		77
B 6.4
(-3)
A 		78.4
(3)
A 		65.4
(1.9)
M 		11.2
(-2.6)
A 		72
C 6.9
(-3)
A 		94.3
(3)
A 		68.8
(1.2)
A 		51.6
(0.1)
A 		87
avr 19.3
(-3) 		64.5
(1.7) 		77.3
(3) 		46.4
(-0.2) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 88
(3)
A 		5.8
(-3)
A 		13.3
(-2.5)
A 		7.8
(-2.9)
A 		68.6
(1.6)
A 		11.3
(-2.6)
A 		82
B 18
(-2.5)
A 		14.6
(-3)
A 		28.7
(-1.1)
A 		45.8
(1.3)
A 		42.5
(0.9)
A 		58
(3)
A 		43
C 50.3
(1.2)
A 		11.8
(-2.5)
A 		46
(0.8)
A 		31.2
(-0.6)
A 		68.8
(3)
A 		6.2
(-3)
A 		63
avr 52.1
(2) 		10.7
(-3) 		29.3
(-0.7) 		28.3
(-0.9) 		60
(3) 		25.2
(-1.2) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 16.2
(0.3)
A 		4.5
(-3)
A 		25.5
(3)
A 		11.2
(-1.1)
A 		21
B 2
(-3)
A 		19.4
(3)
A 		15.2
(1.6)
M 		2.4
(-2.9)
A 		17
C 2.3
(-3)
A 		27.1
(3)
A 		24
(2.3)
A 		8.7
(-1.5)
A 		25
avr 6.8
(-3) 		17
(1.1) 		21.6
(3) 		7.4
(-2.8) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 16.2
(1.6)
A 		2.1
(-3)
A 		2.9
(-2.7)
A 		2
(-3)
A 		20.7
(3)
A 		2.8
(-2.7)
A 		19
B 6.3
(-2.5)
A 		4.9
(-3)
A 		7
(-2.2)
A 		12.1
(-0.4)
A 		17.3
(1.5)
A 		21.6
(3)
A 		17
C 18.6
(1.9)
A 		3.6
(-2.6)
A 		11.7
(-0.1)
A 		6.3
(-1.8)
A 		22.3
(3)
A 		2.1
(-3)
A 		20
avr 13.7
(0.7) 		3.5
(-3) 		7.2
(-1.7) 		6.8
(-1.8) 		20.1
(3) 		8.8
(-1.1) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181495_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10868
Sequence Type Exemplar sequence
Representative Public ID K09B3.1 NCBI
Target Description K09B3.1 /REP_DB=WormBase Gene ID /WP=CE11984 /TR=Q94268 /GB=AAB09105.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068014(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068014 NCBI Caenorhabditis elegans K09B3.1 (K09B3.1) mRNA, complete cds. 11/11 None
SNAP00000024798 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3795750:3796249:1 11/11 None
GENEFINDER00000024800 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3794791:3796249:1 11/11 None
K09B3.1 ENSEMBL cdna:known chromosome:CEL140:IV:3794762:3796262:1 gene:K09B3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3795908-3796255(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09B3.1
Entrez Gene 187188 Entrez gene
SwissProt Q94268 EMBL-EBI
WormBase CE31560 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB09105 Hypothetical protein K09B3.1 [Caenorhabditis elegans] ref|NP_500415.2| K09B3.1 [Caenorhabditis elegans] 5.0E-50
blast AAB09105 Hypothetical protein K09B3.1 [Caenorhabditis elegans] ref|NP_500415.2| K09B3.1 [Caenorhabditis elegans] 2.0E-44
blast CAE63751 Hypothetical protein CBG08286 [Caenorhabditis briggsae] 7.0E-29
blast CAE63751 Hypothetical protein CBG08286 [Caenorhabditis briggsae] 2.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.8E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.8E-11
Sequence
Target Sequence 
>C. ELEGANS:181495_AT
gcggcagacgtgtgcaatgtcctgtggaacttgcagcacaggtgttggagctctcgggtc
catggggtcctacaacccatttggagggtacggagggatgggatacccccaagccggttt
gttagacccccttgctcaattcatcgggagatcgatttacgaaactgggatcctccgaca
accaactccatcgagtagttccaagagcattggtatactgacgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGCAGACGTGTGCAATGTCCTGT 573 293 15 Antisense
CAATGTCCTGTGGAACTTGCAGCAC 255 183 29 Antisense
GCAGCACAGGTGTTGGAGCTCTCGG 124 313 47 Antisense
CCATGGGGTCCTACAACCCATTTGG 567 251 74 Antisense
CCCATTTGGAGGGTACGGAGGGATG 594 225 90 Antisense
TACGGAGGGATGGGATACCCCCAAG 6 649 103 Antisense
CCCCCTTGCTCAATTCATCGGGAGA 98 261 141 Antisense
TCGGGAGATCGATTTACGAAACTGG 509 291 158 Antisense
TTACGAAACTGGGATCCTCCGACAA 603 637 171 Antisense
TCCATCGAGTAGTTCCAAGAGCATT 222 591 201 Antisense
CAAGAGCATTGGTATACTGACGAAA 179 183 216 Antisense
Sequence Source Affymetrix Proprietary Database