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[181494_s_at]

Description T07C4.3B /REP_DB=WormBase Gene ID /WP=CE21158 /TR=Q9U376 /GB=CAA82581.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 93      6grp_total > 97      4grp_total > 25      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 303
1 2 3 4 range
A 203.8
(-3)
P 		402.4
(0.9)
P 		290.3
(-1.3)
P 		507.1
(3)
P 		303
B 228.4
(-3)
P 		307.6
(0)
P 		384
(3)
P 		384.9
(3)
P 		157
C 317.2
(-2.8)
P 		312.3
(-3)
P 		348.2
(-1.6)
P 		468.4
(3)
P 		156
avr 249.8
(-3) 		340.8
(-0.3) 		340.8
(-0.3) 		453.5
(3) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 869
1 2 3 4 5 6 range
A 131.9
(-3)
P 		273.9
(-2)
P 		238.9
(-2.3)
P 		377.2
(-1.3)
P 		764.1
(1.4)
P 		1000.9
(3)
P 		869
B 201.2
(-2.7)
P 		166.5
(-3)
P 		322.9
(-1.5)
P 		355
(-1.2)
P 		577.6
(0.9)
P 		797.9
(3)
P 		631
C 141.2
(-3)
P 		163.5
(-2.8)
P 		247.4
(-2.2)
P 		351.4
(-1.5)
P 		759
(1.4)
P 		985.6
(3)
P 		844
avr 158.1
(-3) 		201.3
(-2.7) 		269.7
(-2.1) 		361.2
(-1.4) 		700.2
(1.2) 		928.1
(3) 		770
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 74.2
(-3)
P 		87.4
(3)
P 		75.9
(-2.2)
P 		74.2
(-3)
P 		13
B 72.8
(-3)
P 		76
(-1.8)
P 		89
(3)
P 		82
(0.4)
P 		16
C 105
(0.7)
P 		89.8
(-1.5)
P 		121.4
(3)
P 		79
(-3)
P 		42
avr 84
(-1) 		84.4
(-0.9) 		95.4
(3) 		78.4
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 24.3
(-3)
P 		97.4
(-1)
P 		52
(-2.2)
P 		95.7
(-1)
P 		230.6
(2.6)
P 		243.7
(3)
P 		219
B 70
(-2.6)
P 		55.4
(-3)
P 		78.4
(-2.4)
P 		94
(-2)
P 		234.7
(1.4)
P 		297.5
(3)
P 		242
C 52.3
(-2.9)
P 		49.9
(-3)
P 		63
(-2.7)
P 		70.7
(-2.6)
P 		245.6
(1.2)
P 		329.9
(3)
P 		280
avr 48.9
(-3) 		67.6
(-2.5) 		64.5
(-2.6) 		86.8
(-2.1) 		237
(1.7) 		290.4
(3) 		242
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181494_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6045
Sequence Type Exemplar sequence
Representative Public ID T07C4.3B NCBI
Target Description T07C4.3B /REP_DB=WormBase Gene ID /WP=CE21158 /TR=Q9U376 /GB=CAA82581.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066887(11), NM_066888(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066887 NCBI Caenorhabditis elegans T07C4.3a (T07C4.3) mRNA, complete cds. 11/11 None
NM_066888 NCBI Caenorhabditis elegans T07C4.3b (T07C4.3) mRNA, complete cds. 11/11 None
SNAP00000030159 ENSEMBL cdna:SNAP chromosome:CEL140:III:10352327:10354639:1 11/11 None
GENEFINDER00000030165 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10352327:10354639:1 11/11 None
T07C4.3a ENSEMBL cdna:known chromosome:CEL140:III:10352043:10354639:1 gene:T07C4.3 11/11 None
T07C4.3b ENSEMBL cdna:known chromosome:CEL140:III:10352073:10354979:1 gene:T07C4.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10352103-10354635(+) 100.0 100.0
Public Domain and Genome References
Ensembl T07C4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82576 Hypothetical protein T07C4.3a [Caenorhabditis elegans] ref|NP_499288.1| T07C4.3a [Caenorhabditis elegans] 0.0
blast CAA82581 Hypothetical protein T07C4.3b [Caenorhabditis elegans] ref|NP_499289.1| T07C4.3b [Caenorhabditis elegans] 0.0
blast CAE56759 Hypothetical protein CBG24562 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181494_S_AT
ggatctatttgcagagctcggagtcaaagataccgatggtttccagctcaaaacagtcga
cagtaatggcagtggaccaggatcctcggagatcatcacagtcattgagactccattgaa
ggatgatcaccgaaaacgagcagattccgtggagagtgacgcagatgttccatactcatt
gtgcagtgaagatgaagcggaaccgatgacaatgatcgacaagtcgatgaaagtatcaca
aagtgccgagcagttgtcccctgtaaaagaagagcagaaggctaagactgtagtagtcaa
cgtcgagctggacggcaatcgtgcggatcccacaatcaaagatcgcattgcagcactgca
ggcgatagtgtcaaagcaacatgtgccaatcgcaaaagtggacagcgtcgacgatgatgt
caggattctcagcagaaccgaggagcttcaacatatggcactggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCTATTTGCAGAGCTCGGAGTC 73 513 1413 Antisense
GATACCGATGGTTTCCAGCTCAAAA 188 425 1441 Antisense
TAATGGCAGTGGACCAGGATCCTCG 229 637 1476 Antisense
ATCCTCGGAGATCATCACAGTCATT 638 37 1494 Antisense
GTGACGCAGATGTTCCATACTCATT 365 481 1568 Antisense
CACAAAGTGCCGAGCAGTTGTCCCC 142 195 1649 Antisense
ACTGTAGTAGTCAACGTCGAGCTGG 307 97 1699 Antisense
TCGAGCTGGACGGCAATCGTGCGGA 346 599 1715 Antisense
CAATCGTGCGGATCCCACAATCAAA 105 181 1728 Antisense
CAAAGATCGCATTGCAGCACTGCAG 254 193 1749 Antisense
GGAGCTTCAACATATGGCACTGGAG 410 521 1854 Antisense
Sequence Source Affymetrix Proprietary Database