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[181493_at]

Description F11D11.8 /REP_DB=WormBase Gene ID /WP=CE15799 /TR=O62157 /GB=CAB04099.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 1.1
(-3)
A 		5
(1.3)
A 		1.3
(-2.8)
A 		6.5
(3)
A 		5
B 8.9
(3)
A 		2.9
(-3)
A 		8.2
(2.3)
A 		6.3
(0.4)
A 		6
C 2.5
(-2.7)
A 		1.4
(-3)
A 		3.4
(-2.4)
A 		22.5
(3)
A 		21
avr 4.2
(-2.2) 		3.1
(-3) 		4.3
(-2.2) 		11.8
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 3.1
(-2)
A 		1.1
(-3)
A 		4
(-1.5)
A 		3.2
(-1.9)
A 		12.6
(3)
A 		1.5
(-2.8)
A 		12
B 1.8
(-2.3)
A 		0.7
(-2.9)
A 		9.9
(2.2)
A 		4.4
(-0.9)
A 		11.4
(3)
A 		0.6
(-3)
A 		11
C 1.4
(-3)
A 		3.6
(-1.7)
A 		11.7
(3)
A 		3.4
(-1.8)
A 		8.9
(1.4)
A 		8.2
(1)
A 		10
avr 2.1
(-2.8) 		1.8
(-3) 		8.5
(1.4) 		3.7
(-1.8) 		11
(3) 		3.4
(-2) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.4
(-2.3)
A 		1.1
(3)
A 		0.3
(-3)
A 		1
(2.3)
A 		1
B 2.9
(3)
A 		0.7
(-3)
A 		1.9
(0.3)
A 		1.3
(-1.4)
A 		2
C 0.8
(-2.3)
A 		0.4
(-3)
A 		1.2
(-1.6)
A 		3.8
(3)
A 		3
avr 1.4
(0.2) 		0.7
(-3) 		1.1
(-1.2) 		2
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.6
(-2.6)
A 		0.4
(-3)
A 		0.9
(-2.1)
A 		0.8
(-2.3)
A 		3.8
(3)
A 		0.4
(-3)
A 		3
B 0.6
(-2.5)
A 		0.2
(-3)
A 		2.4
(0)
A 		1.2
(-1.6)
A 		4.6
(3)
A 		0.2
(-3)
A 		4
C 0.5
(-3)
A 		1.1
(-1.6)
A 		3
(3)
A 		0.7
(-2.5)
A 		2.9
(2.8)
A 		2.8
(2.5)
A 		3
avr 0.6
(-3) 		0.6
(-3) 		2.1
(-0.2) 		0.9
(-2.4) 		3.8
(3) 		1.1
(-2.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181493_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12709
Sequence Type Exemplar sequence
Representative Public ID F11D11.8 NCBI
Target Description F11D11.8 /REP_DB=WormBase Gene ID /WP=CE15799 /TR=O62157 /GB=CAB04099.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075257(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075257 NCBI Caenorhabditis elegans F11D11.8 (F11D11.8) mRNA, complete cds. 11/11 None
F11D11.8 ENSEMBL cdna:known chromosome:CEL140:V:18748784:18749561:-1 gene:F11D11.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039934 8/11 Cross Hyb Matching Probes None
GENEFINDER00000039948 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18748783-18749561(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11D11.8
Entrez Gene 184355 Entrez gene
SwissProt O62157 EMBL-EBI
WormBase CE15799 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04099 Hypothetical protein F11D11.8 [Caenorhabditis elegans] ref|NP_507658.1| F11D11.8 [Caenorhabditis elegans] 1.0E-122
blast CAB04097 Hypothetical protein F11D11.5 [Caenorhabditis elegans] ref|NP_507661.1| F11D11.5 [Caenorhabditis elegans] 5.0E-64
blast CAB04102 Hypothetical protein F11D11.7 [Caenorhabditis elegans] ref|NP_507659.1| F11D11.7 [Caenorhabditis elegans] 6.0E-51
Sequence
Target Sequence 
>C. ELEGANS:181493_AT
gagccacaggctttcgatgctgtaaaggactgtattgatgagtgttttgaggattcagaa
tgcttactggcatttttcaattcagcctgcttccattattatacagaattgccagatgcc
acttgtcctgcctcctacaaggatatcaagtactctgtgacatctgactccggagatata
tattcttggaagaaaactgatgctggatggagctatagccaatgtagggaaggttgggaa
aggttccagaaaacggagcaagttgtgtggtgtgtaaaagtaatggtagagcaagtaact
caacaggttgcaaaggacaaatgtatcgagcaaggtgcagtgcttgctgaaagtggaacc
ttcgaggaatgcgaatggaaacaaggttggtttttttttaatttgacaaatcatagtagt
tgcttgatcattattgcagatactgtagcaacaggagataatatgaaaaatcgtcaaaag
gttggtaaatcatctgattacttagaaggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCACAGGCTTTCGATGCTGTAA 402 385 118 Antisense
GAGGATTCAGAATGCTTACTGGCAT 344 401 166 Antisense
GGCATTTTTCAATTCAGCCTGCTTC 499 537 186 Antisense
TTCAGCCTGCTTCCATTATTATACA 303 687 198 Antisense
GATGCTGGATGGAGCTATAGCCAAT 498 413 316 Antisense
CGGAGCAAGTTGTGTGGTGTGTAAA 312 243 371 Antisense
GGACAAATGTATCGAGCAAGGTGCA 592 525 432 Antisense
AAGGTGCAGTGCTTGCTGAAAGTGG 519 159 449 Antisense
GAAAGTGGAACCTTCGAGGAATGCG 554 359 466 Antisense
ATAGTAGTTGCTTGATCATTATTGC 66 23 530 Antisense
AAATCATCTGATTACTTAGAAGGCA 627 117 604 Antisense
Sequence Source Affymetrix Proprietary Database