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[181492_at]

Description C39B5.5 /REP_DB=WormBase Gene ID /WP=CE20557 /TR=Q9N5X4 /GB=AAF39765.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 47      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 74.6
(3)
A 		59.3
(-3)
A 		72.8
(2.3)
A 		64.1
(-1.1)
A 		15
B 87.8
(3)
M 		9.8
(-2.8)
A 		6.7
(-3)
A 		19.3
(-2.1)
A 		81
C 70.4
(3)
A 		27.9
(-2.8)
A 		38.5
(-1.3)
A 		26.3
(-3)
A 		44
avr 77.6
(3) 		32.3
(-3) 		39.3
(-2.1) 		36.6
(-2.4) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 49.9
(2.6)
A 		52.2
(2.9)
A 		12.1
(-2.8)
A 		33.1
(0.2)
A 		52.8
(3)
A 		10.8
(-3)
A 		42
B 59.8
(3)
A 		55.9
(2.5)
A 		34.7
(-0.5)
A 		56.2
(2.5)
A 		25.4
(-1.8)
A 		16.6
(-3)
A 		43
C 58.5
(2.1)
A 		66.6
(3)
A 		44.8
(0.7)
A 		59.8
(2.3)
A 		10.4
(-3)
A 		17.8
(-2.2)
A 		56
avr 56.1
(2.7) 		58.2
(3) 		30.5
(-0.9) 		49.7
(1.8) 		29.5
(-1) 		15.1
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 27.2
(3)
A 		12.9
(-1.8)
A 		19
(0.2)
A 		9.4
(-3)
A 		18
B 28
(3)
M 		2.4
(-2.8)
A 		1.6
(-3)
A 		4.1
(-2.4)
A 		26
C 23.3
(3)
A 		8
(-1.9)
A 		13.4
(-0.1)
A 		4.4
(-3)
A 		19
avr 26.2
(3) 		7.8
(-2.5) 		11.3
(-1.4) 		6
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 9.2
(-0.5)
A 		18.6
(3)
A 		2.6
(-3)
A 		8.4
(-0.8)
A 		15.9
(2)
A 		2.6
(-3)
A 		16
B 20.8
(3)
A 		18.6
(2.1)
A 		8.4
(-2.1)
A 		14.9
(0.6)
A 		10.3
(-1.3)
A 		6.2
(-3)
A 		15
C 21.7
(3)
A 		20.3
(2.5)
A 		11.4
(-0.4)
A 		12
(-0.2)
A 		3.4
(-3)
A 		5.9
(-2.2)
A 		18
avr 17.2
(2.2) 		19.2
(3) 		7.5
(-1.9) 		11.8
(-0.1) 		9.9
(-0.9) 		4.9
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181492_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8340
Sequence Type Exemplar sequence
Representative Public ID C39B5.5 NCBI
Target Description C39B5.5 /REP_DB=WormBase Gene ID /WP=CE20557 /TR=Q9N5X4 /GB=AAF39765.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065110(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065110 NCBI Caenorhabditis elegans C39B5.5 (C39B5.5) mRNA, complete cds. 11/11 None
SNAP00000012607 ENSEMBL cdna:SNAP chromosome:CEL140:III:2202741:2218560:1 11/11 None
GENEFINDER00000012628 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2213311:2217083:1 11/11 None
C39B5.5 ENSEMBL cdna:known chromosome:CEL140:III:2208258:2214602:1 gene:C39B5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2208257-2214602(+) 95.6 100.0
Public Domain and Genome References
Gene Title
Ensembl C39B5.5
Entrez Gene 183324 Entrez gene
SwissProt Q9N5X4 EMBL-EBI
WormBase CE20557 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
4806 triacylglycerol lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39765 Hypothetical protein C39B5.5 [Caenorhabditis elegans] ref|NP_497511.1| C39B5.5 [Caenorhabditis elegans] 0.0
blast AAF39770 Hypothetical protein C39B5.6 [Caenorhabditis elegans] ref|NP_497510.1| C39B5.6 [Caenorhabditis elegans] 1.0E-162
blast CAB61137 Hypothetical protein Y51H4A.5 [Caenorhabditis elegans] ref|NP_502962.1| Y51H4A.5 [Caenorhabditis elegans] 1.0E-146
blast CAB61137 Hypothetical protein Y51H4A.5 [Caenorhabditis elegans] ref|NP_502962.1| Y51H4A.5 [Caenorhabditis elegans] 1.0E-126
blast CAB61137 Hypothetical protein Y51H4A.5 [Caenorhabditis elegans] ref|NP_502962.1| Y51H4A.5 [Caenorhabditis elegans] 1.0E-123
blast CAE66417 Hypothetical protein CBG11685 [Caenorhabditis briggsae] 1.0E-119
blast CAB11554 Hypothetical protein Y49E10.18 [Caenorhabditis elegans] ref|NP_499623.2| Y49E10.18 [Caenorhabditis elegans] 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 2.1E-64
Pfam IPR006075 EMBL-EBI GatB N-terminal region 7.4E-40
Pfam IPR006107 EMBL-EBI GatB central domain 3.6E-13
Pfam IPR002921 EMBL-EBI Lipase, class 3 2.1E-64
Pfam IPR002921 EMBL-EBI Lipase, class 3 2.1E-64
Sequence
Target Sequence 
>C. ELEGANS:181492_AT
atagtcctctacagctgaccgatgagattttggactttttcaccggaaaaaaacaattct
tcccggacgccggcaatattttcacctacttttacgatgccttcttcttcctctggaatg
cgggcctacaacaggatattcgccagctcaagtacaaatatccagattatgagctctggg
tagtcggacactcccttggaggagcaattgcctccgttgcggcttcctacgtagtccata
cgggactattcaccggggacaaggttaagctcgtcactatgggacagccaagaaccggag
attatgattatgccacgtggcatgacaaaacattcccatattccttccgcatcgtccatc
ataaggatattgtgccccatattccaccgcaagagggagccgacaagcttttccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGTCCTCTACAGCTGACCGATGA 564 21 758 Antisense
ACGCCGGCAATATTTTCACCTACTT 632 89 824 Antisense
CTTCTTCTTCCTCTGGAATGCGGGC 543 221 858 Antisense
ACAGGATATTCGCCAGCTCAAGTAC 254 105 888 Antisense
TATGAGCTCTGGGTAGTCGGACACT 251 657 925 Antisense
GGAGGAGCAATTGCCTCCGTTGCGG 659 513 955 Antisense
GGCTTCCTACGTAGTCCATACGGGA 108 537 978 Antisense
TAAGCTCGTCACTATGGGACAGCCA 276 637 1023 Antisense
TGACAAAACATTCCCATATTCCTTC 681 571 1080 Antisense
CCTTCCGCATCGTCCATCATAAGGA 47 271 1100 Antisense
AGAGGGAGCCGACAAGCTTTTCCAT 503 59 1149 Antisense
Sequence Source Affymetrix Proprietary Database