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[181491_at]

Description F44D12.9 /REP_DB=WormBase Gene ID /WP=CE03332 /TR=Q20396 /GB=CAA92605.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 61      6grp_total > 62      4grp_total > 62      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 97.4
(3)
P 		74.1
(1.2)
A 		50.6
(-0.7)
P 		21.6
(-3)
A 		76
B 84
(1.4)
P 		44.6
(-3)
A 		98.2
(3)
P 		45.9
(-2.9)
A 		54
C 107
(2.4)
P 		46.2
(-0.9)
P 		119.3
(3)
P 		5.5
(-3)
A 		114
avr 96.1
(3) 		55
(-0.4) 		89.4
(2.4) 		24.3
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 30.3
(-3)
A 		90.9
(0.7)
P 		110.4
(1.8)
P 		129.4
(3)
P 		106.2
(1.6)
P 		58.1
(-1.3)
A 		99
B 58.5
(-1.7)
P 		80.6
(-0.7)
P 		160.2
(3)
P 		30.1
(-3)
A 		52.1
(-2)
P 		31
(-3)
A 		130
C 71.8
(-1.7)
P 		77.5
(-1.5)
P 		77.3
(-1.5)
A 		173.5
(3)
P 		67
(-1.9)
A 		44.3
(-3)
P 		129
avr 53.5
(-2.2) 		83
(0.2) 		116
(3) 		111
(2.6) 		75.1
(-0.4) 		44.5
(-3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 35.5
(3)
P 		16.1
(-0.6)
A 		13.2
(-1.1)
P 		3.2
(-3)
A 		32
B 26.8
(3)
P 		11
(-2.6)
A 		22.8
(1.6)
P 		9.8
(-3)
A 		17
C 35.4
(2.1)
P 		13.3
(-1.2)
P 		41.6
(3)
P 		0.9
(-3)
A 		41
avr 32.6
(3) 		13.5
(-1.1) 		25.9
(1.6) 		4.6
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 5.6
(-3)
A 		32.3
(2.9)
P 		24
(1.1)
P 		32.8
(3)
P 		32
(2.8)
P 		14.1
(-1.1)
A 		27
B 20.3
(-0.6)
P 		26.8
(0.7)
P 		38.9
(3)
P 		8
(-3)
A 		21.2
(-0.4)
P 		11.5
(-2.3)
A 		31
C 26.6
(0.5)
P 		23.6
(-0.4)
P 		19.7
(-1.5)
A 		34.9
(3)
P 		21.7
(-0.9)
A 		14.8
(-3)
P 		20
avr 17.5
(-1.3) 		27.6
(3) 		27.5
(3) 		25.2
(2) 		25
(1.9) 		13.5
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181491_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9609
Sequence Type Exemplar sequence
Representative Public ID F44D12.9 NCBI
Target Description F44D12.9 /REP_DB=WormBase Gene ID /WP=CE03332 /TR=Q20396 /GB=CAA92605.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069406(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069406 NCBI Caenorhabditis elegans F44D12.9 (F44D12.9) mRNA, complete cds. 10/11 A 
F44D12.9.1 ENSEMBL cdna:known chromosome:CEL140:IV:10018988:10021196:1 gene:F44D12.9 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020511 8/11 Cross Hyb Matching Probes None
GENEFINDER00000020529 8/11 Cross Hyb Matching Probes None
F44D12.9.2 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10018992-10019562(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44D12.9
Entrez Gene 177862 Entrez gene
SwissProt Q20396 EMBL-EBI
WormBase CE32188 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5337 nucleoside transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92605 Hypothetical protein F44D12.9 [Caenorhabditis elegans] ref|NP_501807.2| F44D12.9 [Caenorhabditis elegans] 0.0
blast CAE59943 Hypothetical protein CBG03430 [Caenorhabditis briggsae] 0.0
blast CAB62793 Hypothetical protein C47A4.2b [Caenorhabditis elegans] ref|NP_001023069.1| C47A4.2b [Caenorhabditis elegans] 8.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR002259 EMBL-EBI Delayed-early response protein/equilibrative nucleoside transporter 7.9E-20
Pfam IPR002259 EMBL-EBI Delayed-early response protein/equilibrative nucleoside transporter 3.8E-45
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501807.2 10 37-59,83-105,112-134,139-161,181-200,243-265,278-300,315-332,352-374,389-411
F44D12.9.1 10 37-59,83-105,112-134,139-161,181-200,243-265,278-300,315-332,352-374,389-411
Sequence
Target Sequence 
>C. ELEGANS:181491_AT
gaagaagaaggctctcccttatcttattttcaatatcttcatgtagagtataatatttgt
aatggcagaaaatgggggcaaacaaccctcaaaatgaacgaggaacttgccgaaaattca
tcagtcactggcaactcacaaattggtttagtgacacctcgagacacatggggccggaaa
gagagttcaccaacagatcgatggtatcttgtttatataatttttacaatgcacggaatg
ggaatgttaatgtcatggaatatgtttattacaattgctccacaatactatcacgattat
tggtttaacaatacaaattatcaagacagttttatgtcaattattggagtgacgtcacag
attccaaatgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAAGAAGGCTCTCCCTTATCTT 319 341 34 Antisense
CTCTCCCTTATCTTATTTTCAATAT 566 231 45 Antisense
ATGGGGGCAAACAACCCTCAAAATG 503 37 105 Antisense
TCATCAGTCACTGGCAACTCACAAA 123 621 151 Antisense
ATTGGTTTAGTGACACCTCGAGACA 426 3 175 Antisense
CCTCGAGACACATGGGGCCGGAAAG 482 265 190 Antisense
GGGCCGGAAAGAGAGTTCACCAACA 476 309 204 Antisense
GTTCACCAACAGATCGATGGTATCT 432 445 218 Antisense
ATATGTTTATTACAATTGCTCCACA 639 21 293 Antisense
ATTGCTCCACAATACTATCACGATT 328 7 307 Antisense
GTGACGTCACAGATTCCAAATGTTG 238 483 382 Antisense
Sequence Source Affymetrix Proprietary Database