[Home] | [Total List]

[181490_at]

Description F11D11.7 /REP_DB=WormBase Gene ID /WP=CE15798 /TR=O62156 /GB=CAB04102.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 48      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 4.8
(-0)
A 		2.2
(-3)
A 		2.7
(-2.4)
A 		7.4
(3)
A 		5
B 4.9
(-2.9)
A 		7.8
(-2.3)
A 		37.4
(3)
A 		4.2
(-3)
A 		33
C 4.7
(-3)
A 		42.2
(3)
A 		24.5
(0.2)
A 		7.1
(-2.6)
A 		38
avr 4.8
(-3) 		17.4
(1.5) 		21.5
(3) 		6.2
(-2.5) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 21.4
(1.2)
A 		5.2
(-3)
A 		18
(0.3)
A 		28.6
(3)
A 		5.9
(-2.8)
A 		23.7
(1.7)
A 		23
B 14.9
(1.8)
A 		18.2
(3)
A 		2.6
(-2.7)
A 		12.9
(1)
A 		4.8
(-1.9)
A 		1.9
(-3)
A 		16
C 1.7
(-3)
A 		2.6
(-2.8)
A 		29.7
(3)
A 		24.6
(1.9)
A 		16.4
(0.1)
A 		22.6
(1.5)
A 		28
avr 12.7
(-1.2) 		8.7
(-3) 		16.8
(0.7) 		22
(3) 		9
(-2.9) 		16.1
(0.3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.7
(3)
A 		0.5
(-3)
A 		0.7
(-2)
A 		1.1
(0)
A 		1
B 1.6
(-2.5)
A 		1.9
(-2.2)
A 		8.7
(3)
A 		0.9
(-3)
A 		8
C 1.6
(-2.8)
A 		12.1
(3)
A 		8.5
(1)
A 		1.2
(-3)
A 		11
avr 1.6
(-2.4) 		4.8
(1.5) 		6
(3) 		1.1
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 3.9
(-0.7)
A 		1.9
(-2.9)
A 		3.9
(-0.7)
A 		7.2
(3)
A 		1.8
(-3)
A 		5.8
(1.4)
A 		5
B 5.2
(2)
A 		6.1
(3)
A 		0.6
(-3)
A 		3.4
(0.1)
A 		1.9
(-1.6)
A 		0.7
(-2.9)
A 		6
C 0.6
(-3)
A 		0.8
(-2.8)
A 		7.6
(3)
A 		4.9
(0.7)
A 		5.3
(1)
A 		7.6
(3)
A 		7
avr 3.2
(-2.2) 		2.9
(-3) 		4
(-0.1) 		5.2
(3) 		3
(-2.7) 		4.7
(1.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181490_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12817
Sequence Type Exemplar sequence
Representative Public ID F11D11.7 NCBI
Target Description F11D11.7 /REP_DB=WormBase Gene ID /WP=CE15798 /TR=O62156 /GB=CAB04102.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075258(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075258 NCBI Caenorhabditis elegans F11D11.7 (F11D11.7) mRNA, complete cds. 11/11 None
F11D11.7 ENSEMBL cdna:known chromosome:CEL140:V:18750517:18751400:-1 gene:F11D11.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039935 7/11 Cross Hyb Matching Probes None
GENEFINDER00000039945 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18750516-18751400(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11D11.7
Entrez Gene 184354 Entrez gene
SwissProt O62156 EMBL-EBI
WormBase CE15798 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04102 Hypothetical protein F11D11.7 [Caenorhabditis elegans] ref|NP_507659.1| F11D11.7 [Caenorhabditis elegans] 1.0E-144
blast CAB04097 Hypothetical protein F11D11.5 [Caenorhabditis elegans] ref|NP_507661.1| F11D11.5 [Caenorhabditis elegans] 6.0E-61
blast CAB04099 Hypothetical protein F11D11.8 [Caenorhabditis elegans] ref|NP_507658.1| F11D11.8 [Caenorhabditis elegans] 2.0E-56
Sequence
Target Sequence 
>C. ELEGANS:181490_AT
gagcagccaaattgcctagcggtacacttcaaatctgtatgttctcattattttgttaat
aactattcagttactgtcgtcgaatcggatagaagcgaagagcattatgttgcaattaag
acagagttgccagaagccacttgtcctgcctcctacaaggatatcaagtactctgtgaca
tctgactccggagatatatattcttggaagaaaactgataatggatggagctatcgacaa
tgcaattttggttggaaaaggtttcaaaaaaccgatacacttgtaatgtgtgtaaaagta
atggtagatcaagtaactcaacaggttgcaaaggagaaatgtatcgagcgaggtgcagtg
ctagctagaatcgaaacccccgaggagtgcaaatggaaacaagatatcgtagcaaataaa
tatttcgaaaagggaatttggattgatggaagagcagcaagtggtacaagaatagaaagt
tgcgatgacaagtttcctgagttggtttcctacgagacaagcgctggggattgtttgtat
actgccgcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAGCCAAATTGCCTAGCGGTAC 391 389 163 Antisense
TGCCTAGCGGTACACTTCAAATCTG 414 583 175 Antisense
ATTCAGTTACTGTCGTCGAATCGGA 158 9 227 Antisense
AAGACAGAGTTGCCAGAAGCCACTT 218 153 280 Antisense
ATCGAGCGAGGTGCAGTGCTAGCTA 60 37 505 Antisense
AGTGCTAGCTAGAATCGAAACCCCC 449 59 519 Antisense
CGAAACCCCCGAGGAGTGCAAATGG 616 251 534 Antisense
AGTTGCGATGACAAGTTTCCTGAGT 246 63 640 Antisense
GTTTCCTGAGTTGGTTTCCTACGAG 704 449 654 Antisense
TTCCTACGAGACAAGCGCTGGGGAT 75 699 669 Antisense
GGGGATTGTTTGTATACTGCCGCCT 445 497 688 Antisense
Sequence Source Affymetrix Proprietary Database