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[181488_at]

Description F36A2.12 /REP_DB=WormBase Gene ID /WP=CE09951 /TR=Q9XVP2 /GB=CAB03063.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 79      6grp_total > 98      4grp_total > 26      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 44.9
(-3)
P 		55.2
(-1.5)
P 		54.8
(-1.5)
A 		85.7
(3)
M 		41
B 32.9
(-3)
A 		81.6
(3)
A 		58.9
(0.2)
A 		68.8
(1.4)
A 		49
C 36.3
(-2.2)
A 		51.2
(-0.7)
A 		28.3
(-3)
A 		88.1
(3)
P 		60
avr 38
(-3) 		62.7
(0.5) 		47.3
(-1.7) 		80.9
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 104.2
(1.9)
P 		2.3
(-3)
A 		77.8
(0.6)
P 		57.1
(-0.4)
P 		82.3
(0.8)
P 		127.3
(3)
P 		125
B 40.3
(-1.3)
A 		45.7
(-0.7)
P 		25.1
(-3)
A 		53.3
(0.2)
A 		78.8
(3)
P 		75.6
(2.6)
P 		54
C 48.8
(-2.9)
P 		89.3
(1.1)
P 		55.4
(-2.2)
A 		47.5
(-3)
A 		93.7
(1.5)
P 		109.3
(3)
P 		62
avr 64.4
(-1.1) 		45.8
(-3) 		52.8
(-2.3) 		52.6
(-2.3) 		84.9
(1) 		104.1
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 16.3
(3)
P 		12
(-3)
P 		14.3
(0.2)
A 		12.5
(-2.3)
M 		4
B 10.5
(-3)
A 		20.2
(3)
A 		13.7
(-1)
A 		14.7
(-0.4)
A 		10
C 12
(-0.4)
A 		14.7
(2.8)
A 		9.8
(-3)
A 		14.9
(3)
P 		5
avr 12.9
(-2.4) 		15.6
(3) 		12.6
(-3) 		14
(-0.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 19.2
(0.7)
P 		0.8
(-3)
A 		16.9
(0.2)
P 		14.5
(-0.3)
P 		24.8
(1.8)
P 		31
(3)
P 		30
B 14
(-1.2)
A 		15.2
(-0.9)
P 		6.1
(-3)
A 		14.1
(-1.1)
A 		32
(3)
P 		28.2
(2.1)
P 		26
C 18.1
(-1.1)
P 		27.3
(0.9)
P 		14.1
(-2)
A 		9.6
(-3)
A 		30.3
(1.6)
P 		36.6
(3)
P 		27
avr 17.1
(-1.6) 		14.4
(-2.4) 		12.4
(-3) 		12.7
(-2.9) 		29
(2.1) 		31.9
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181488_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.720
Sequence Type Exemplar sequence
Representative Public ID F36A2.12 NCBI
Target Description F36A2.12 /REP_DB=WormBase Gene ID /WP=CE09951 /TR=Q9XVP2 /GB=CAB03063.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026280(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026280 NCBI Caenorhabditis elegans F36A2.14 (F36A2.14) mRNA, complete cds. 11/11 None
SNAP00000004928 ENSEMBL cdna:SNAP chromosome:CEL140:I:8832556:8833599:-1 11/11 None
GENEFINDER00000004942 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8832556:8833599:-1 11/11 None
F36A2.14 ENSEMBL cdna:known chromosome:CEL140:I:8832556:8833599:-1 gene:F36A2.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8832486-8834632(-) 96.95 100.0
Public Domain and Genome References
Gene Title
Ensembl F36A2.14
Entrez Gene 3565250 Entrez gene
SwissProt Q65ZA8 EMBL-EBI
WormBase CE37233 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH19097 Hypothetical protein F36A2.14 [Caenorhabditis elegans] ref|NP_001021451.1| F36A2.14 [Caenorhabditis elegans] 1.0E-121
blast CAE60699 Hypothetical protein CBG04362 [Caenorhabditis briggsae] 1.0E-46
Sequence
Target Sequence 
>C. ELEGANS:181488_AT
gagtgatgacaccacaaagccggcggaagaaacgaagaaaactgtttctagcaagaagca
aaagaaagttaaatccgaggaatgtgatcatcttggagttcctctttcgaatccaatggc
aatcactccgttccctggtaaaacaactgctgccaaacgtgaaaaagctcgccaaatgct
gaaagaacttgcaacgaagatgtatgaagatgacttgaagaaacaaggaaaaagctcaac
atcttccaaaagtggcaaaaaagcaaaaagtgtgaagagccgaagcaccaagaagagcag
cagttccactgggctcaaaagttcaaaaaactcgaataagttaatgggatgtgacaagtg
tggaagttgccaaaagtgtattgttcgctgctctcaacaccatccagcagagcaaaaagt
gacatcagctgagagagaagagtttctgaaaagtatcaaacaacttcgtaagagaatcat
gaaaccagagagaagtcgcgaaaaggccaccaaatctccatacgacgtcactcaaagtgt
gtctgacaccggaaagagctcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGATGACACCACAAAGCCGGCG 610 401 591 Antisense
AATGTGATCATCTTGGAGTTCCTCT 661 163 671 Antisense
TGGAGTTCCTCTTTCGAATCCAATG 505 549 684 Antisense
GAATCCAATGGCAATCACTCCGTTC 496 329 699 Antisense
GTTCCCTGGTAAAACAACTGCTGCC 92 441 720 Antisense
AAGAGCAGCAGTTCCACTGGGCTCA 160 155 883 Antisense
AAAAGTGTATTGTTCGCTGCTCTCA 304 133 962 Antisense
CTCTCAACACCATCCAGCAGAGCAA 29 231 981 Antisense
GAAAAGGCCACCAAATCTCCATACG 57 355 1090 Antisense
ATCTCCATACGACGTCACTCAAAGT 126 31 1104 Antisense
GTGTCTGACACCGGAAAGAGCTCGA 10 487 1129 Antisense
Sequence Source Affymetrix Proprietary Database