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[181487_at]

Description K07G6.1 /REP_DB=WormBase Gene ID /WP=CE21030 /TR=Q9TYQ3 /GB=AAD12802.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 0      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 3
(-3)
A 		4.2
(-2.8)
A 		32.3
(3)
A 		6.4
(-2.3)
A 		29
B 15
(3)
A 		4
(-2.2)
A 		2.3
(-3)
A 		5.3
(-1.6)
A 		13
C 1.7
(-3)
A 		4.7
(-2.6)
A 		4
(-2.7)
A 		43.7
(3)
A 		42
avr 6.6
(-2) 		4.3
(-3) 		12.9
(0.6) 		18.5
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 24.2
(3)
A 		2.9
(-2.8)
A 		9
(-1.1)
A 		3.4
(-2.6)
A 		2.2
(-2.9)
A 		2
(-3)
A 		22
B 13.7
(3)
A 		5.5
(-1.1)
A 		9.2
(0.7)
A 		2.8
(-2.5)
A 		2.9
(-2.4)
A 		1.8
(-3)
A 		12
C 2.1
(-2.6)
A 		10.8
(3)
A 		3.9
(-1.5)
A 		7.5
(0.9)
A 		6.5
(0.2)
A 		1.5
(-3)
A 		9
avr 13.3
(3) 		6.4
(-0.6) 		7.4
(-0.1) 		4.6
(-1.5) 		3.9
(-1.9) 		1.8
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.1
(-2.8)
A 		0.9
(-3)
A 		8.4
(3)
A 		0.9
(-3)
A 		8
B 4.8
(3)
A 		1
(-2.3)
A 		0.5
(-3)
A 		1.1
(-2.2)
A 		4
C 0.6
(-3)
A 		1.3
(-2.4)
A 		1.4
(-2.3)
A 		7.4
(3)
A 		7
avr 2.2
(-0.1) 		1.1
(-3) 		3.4
(3) 		3.1
(2.2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 4.5
(3)
A 		1
(-2.3)
A 		2
(-0.8)
A 		0.9
(-2.4)
A 		0.7
(-2.7)
A 		0.5
(-3)
A 		4
B 4.8
(3)
A 		1.8
(-1.4)
A 		2.2
(-0.8)
A 		0.7
(-3)
A 		1.2
(-2.3)
A 		0.7
(-3)
A 		4
C 0.8
(-2.4)
A 		3.3
(3)
A 		1
(-1.9)
A 		1.5
(-0.9)
A 		2.1
(0.4)
A 		0.5
(-3)
A 		3
avr 3.4
(3) 		2
(-0) 		1.7
(-0.6) 		1
(-2.1) 		1.3
(-1.5) 		0.6
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181487_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4735
Sequence Type Exemplar sequence
Representative Public ID K07G6.1 NCBI
Target Description K07G6.1 /REP_DB=WormBase Gene ID /WP=CE21030 /TR=Q9TYQ3 /GB=AAD12802.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061664(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061664 NCBI Caenorhabditis elegans K07G6.1 (K07G6.1) mRNA, complete cds. 11/11 None
K07G6.1 ENSEMBL cdna:known chromosome:CEL140:II:1741551:1742192:1 gene:K07G6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1741549-1742191(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07G6.1
Entrez Gene 187124 Entrez gene
SwissProt Q9TYQ3 EMBL-EBI
WormBase CE21030 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12802 Hypothetical protein K07G6.1 [Caenorhabditis elegans] ref|NP_494065.1| K07G6.1 [Caenorhabditis elegans] 4.0E-75
blast AAK31517 C-type lectin protein 19 [Caenorhabditis elegans] ref|NP_494066.1| C-type LECtin family member (clec-19) [Caenorhabditis elegans] 5.0E-57
blast AAB71062 Hypothetical protein R52.4 [Caenorhabditis elegans] ref|NP_494183.1| R52.4 [Caenorhabditis elegans] 5.0E-21
Sequence
Target Sequence 
>C. ELEGANS:181487_AT
tttcgatttaccctcactgttattgcgtttctaactactcaatcagatgcctgtatgaaa
atgatctcacctgatgatgtttccatctcgacgccagctccaccgttgccttgcacacaa
tgtgatacgaagagtgttgtggagaatccaactaaccccgagatgcaagttccgacgact
tggaaagagacgacaccgaccgccgagggttgcacgcagtacatagcggaattccaggcg
cccgcaggacaaacttgcatatcgctctcagtttatatcacccaagctgatgatccagaa
aacagaatttataaagtgaactcaggaacatacgcagctttgacattcacgtgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCGATTTACCCTCACTGTTATTG 195 671 19 Antisense
TACCCTCACTGTTATTGCGTTTCTA 608 649 27 Antisense
TTGCGTTTCTAACTACTCAATCAGA 258 703 41 Antisense
AATGATCTCACCTGATGATGTTTCC 294 165 78 Antisense
CTGATGATGTTTCCATCTCGACGCC 131 239 89 Antisense
TTGGAAAGAGACGACACCGACCGCC 662 707 198 Antisense
GCCGAGGGTTGCACGCAGTACATAG 48 285 220 Antisense
GCACGCAGTACATAGCGGAATTCCA 556 315 230 Antisense
ATATCGCTCTCAGTTTATATCACCC 277 21 277 Antisense
TTATATCACCCAAGCTGATGATCCA 629 679 291 Antisense
TACGCAGCTTTGACATTCACGTGTA 106 649 349 Antisense
Sequence Source Affymetrix Proprietary Database