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[181485_s_at]

Description Y48B6A.1 /REP_DB=WormBase Gene ID /WP=CE22116 /TR=Q9U2A9 /GB=CAB54439.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 93      6grp_total > 89      4grp_total > 52      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 386
1 2 3 4 range
A 814.8
(3)
P 		676.6
(-3)
P 		724.5
(-0.9)
P 		720.1
(-1.1)
P 		138
B 810
(3)
P 		718.2
(-2.7)
P 		742.3
(-1.2)
P 		712.6
(-3)
P 		97
C 764.5
(-0.5)
P 		987.7
(3)
P 		779.3
(-0.2)
P 		601.7
(-3)
P 		386
avr 796.4
(3) 		794.2
(2.9) 		748.7
(0.6) 		678.1
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 539
1 2 3 4 5 6 range
A 315.3
(-2.5)
P 		421.6
(-1.3)
P 		273.3
(-3)
P 		321.2
(-2.5)
P 		422
(-1.3)
P 		811.6
(3)
P 		538
B 292.4
(-2.6)
P 		273
(-3)
P 		330.5
(-1.9)
P 		332.9
(-1.8)
P 		500.2
(1.5)
P 		574.5
(3)
P 		302
C 516
(1.5)
P 		366.5
(-1.7)
P 		374.2
(-1.6)
P 		309.1
(-3)
P 		584.1
(3)
P 		513.2
(1.5)
P 		275
avr 374.6
(-2) 		353.7
(-2.4) 		326
(-2.9) 		321.1
(-3) 		502.1
(0.5) 		633.1
(3) 		312
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 296.7
(3)
P 		146.9
(-1.7)
P 		189.4
(-0.4)
P 		105.4
(-3)
P 		191
B 258.3
(3)
P 		177.4
(-1.6)
P 		172
(-1.9)
P 		151.9
(-3)
P 		106
C 253.1
(2)
P 		284
(3)
P 		271.6
(2.6)
P 		101.5
(-3)
P 		183
avr 269.4
(3) 		202.8
(0.3) 		211
(0.7) 		119.6
(-3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 58.1
(-3)
P 		149.9
(0.9)
P 		59.5
(-2.9)
P 		81.5
(-2)
P 		127.3
(-0)
P 		197.6
(3)
P 		140
B 101.7
(-2)
P 		90.9
(-2.5)
P 		80.3
(-3)
P 		88.2
(-2.6)
P 		203.2
(2.5)
P 		214.2
(3)
P 		134
C 191.3
(3)
P 		111.8
(-0.7)
P 		95.2
(-1.5)
P 		62.2
(-3)
P 		189
(2.9)
P 		171.8
(2.1)
P 		129
avr 117
(-1) 		117.5
(-0.9) 		78.3
(-2.9) 		77.3
(-3) 		173.2
(1.9) 		194.5
(3) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181485_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3836
Sequence Type Exemplar sequence
Representative Public ID Y48B6A.1 NCBI
Target Description Y48B6A.1 /REP_DB=WormBase Gene ID /WP=CE22116 /TR=Q9U2A9 /GB=CAB54439.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064555(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064555 NCBI Caenorhabditis elegans Y48B6A.1 (Y48B6A.1) mRNA, complete cds. 11/11 None
SNAP00000022954 ENSEMBL cdna:SNAP chromosome:CEL140:II:14151246:14154264:-1 11/11 None
GENEFINDER00000022980 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14151246:14154264:-1 11/11 None
Y48B6A.1.1 ENSEMBL cdna:known chromosome:CEL140:II:14150765:14154264:-1 gene:Y48B6A.1 11/11 None
Y48B6A.1.2 ENSEMBL cdna:known chromosome:CEL140:II:14151075:14154264:-1 gene:Y48B6A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14151242-14154261(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48B6A.1
Entrez Gene 175069 Entrez gene
SwissProt Q9U2A9 EMBL-EBI
WormBase CE22116 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:19196_AT transducin family protein / WD-40 repeat family protein at
ATH1-121501:263824_AT transducin family protein / WD-40 repeat family protein at
DROSOPHILA_2:1636468_A_AT dm
DROSGENOME1:154156_AT dm
HG-U133_PLUS_2:216397_S_AT block of proliferation 1 hs
HG-U133A_2:216397_S_AT block of proliferation 1 hs
HG-U133A:216397_S_AT block of proliferation 1 hs
HU35KSUBA:RC_AA482546_S_AT block of proliferation 1 hs
HUGENEFL:D50914_AT block of proliferation 1 hs
U133_X3P:HS.30736.1.S1_3P_A_AT block of proliferation 1 hs
U133_X3P:HS.30736.0.S1_3P_AT block of proliferation 1 hs
HG-U133A_2:212563_AT block of proliferation 1 hs
HG-U133_PLUS_2:212563_AT block of proliferation 1 hs
HG-U133A:212563_AT block of proliferation 1 hs
HG-U95AV2:35615_AT block of proliferation 1 hs
HG-U95D:81486_R_AT Block of proliferation 1 hs
MU11KSUBA:U77415_S_AT block of proliferation 1 mm
MG-U74AV2:161599_I_AT block of proliferation 1 mm
MG-U74AV2:160878_AT block of proliferation 1 mm
MOE430A:1423264_AT block of proliferation 1 mm
MOUSE430A_2:1423264_AT block of proliferation 1 mm
MOUSE430_2:1423264_AT block of proliferation 1 mm
MOE430B:1430491_AT block of proliferation 1 mm
MOUSE430_2:1430491_AT block of proliferation 1 mm
RG-U34C:RC_AI169617_AT block of proliferation 1 (predicted) rn
RAE230B:1392910_AT block of proliferation 1 (predicted) rn
RAT230_2:1392910_AT block of proliferation 1 (predicted) rn
YEAST_2:1769597_AT Protein required for maturation of the 25S and 5.8S ribosomal RNAs; constituent of 66S pre-ribosomal particles; homologous to mammalian Bop1 Sc
Protein Similarities
Method ID Description E-Value
blast CAB54439 Hypothetical protein Y48B6A.1 [Caenorhabditis elegans] ref|NP_496956.1| Y48B6A.1 [Caenorhabditis elegans] 0.0
blast CAE73453 Hypothetical protein CBG20902 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.3.ARID domain All alpha proteins; DNA/RNA-binding 3-helical bundle; ARID-like; ARID domain 10.0
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.7E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.2E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.4E-4
Sequence
Target Sequence 
>C. ELEGANS:181485_S_AT
caaagtcggtctacgtgcatcagctgagcaaggcaaaatcgcagtgcccattccaaaaac
gcaagggacacgtgcaggcggtcactttccacccgacacaagcccggctcttcgtggcca
cgaaaatccacgtcagagagtacgatctggctcgttgtgtgctcgtcaagaagctgatca
caggatgcaagcacatctccaccatggcaaccgatgcgaacggtgagaatctgttcctcg
gaggactggatcgacgcttctgttggatggatctgcaaatgggcaacaagccgtggaaga
agctgaaacatcataccgcggccgtgagaagtgtcgcctatcataagaagtatccgttgt
tggcgacagtgtcggatgatggaactgcgatggtttattatgcgagaatttatacggatt
ttgtgaaggataatgagctttatccggtcaagaggctccgggctcatgagaagact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAGTCGGTCTACGTGCATCAGCT 264 193 1463 Antisense
TCGCAGTGCCCATTCCAAAAACGCA 503 599 1501 Antisense
GAGTACGATCTGGCTCGTTGTGTGC 640 397 1600 Antisense
CACAGGATGCAAGCACATCTCCACC 519 195 1641 Antisense
TCCACCATGGCAACCGATGCGAACG 599 587 1660 Antisense
GTTCCTCGGAGGACTGGATCGACGC 258 441 1695 Antisense
GACGCTTCTGTTGGATGGATCTGCA 143 381 1715 Antisense
GAAGCTGAAACATCATACCGCGGCC 569 343 1761 Antisense
TACCGCGGCCGTGAGAAGTGTCGCC 683 645 1776 Antisense
GTATCCGTTGTTGGCGACAGTGTCG 377 455 1812 Antisense
GAGGCTCCGGGCTCATGAGAAGACT 42 405 1914 Antisense
Sequence Source Affymetrix Proprietary Database