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[181484_s_at]

Description C45G3.2B /REP_DB=WormBase Gene ID /WP=CE15712 /TR=O17667 /GB=CAB07175.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 13      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 70      6grp_total > 14      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 269
1 2 3 4 range
A 435
(3)
P 		263.7
(-1.2)
P 		188.4
(-3)
P 		294.1
(-0.4)
P 		247
B 444.1
(3)
P 		231.4
(-1.8)
P 		179
(-3)
P 		211.5
(-2.3)
P 		265
C 447.5
(3)
P 		244.5
(-2.2)
P 		212
(-3)
P 		261.9
(-1.7)
P 		236
avr 442.2
(3) 		246.5
(-1.7) 		193.1
(-3) 		255.8
(-1.5) 		249

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 304
1 2 3 4 5 6 range
A 264.5
(0.1)
P 		380.9
(3)
P 		149.2
(-2.8)
P 		292.6
(0.8)
P 		141.8
(-3)
P 		203.3
(-1.5)
P 		239
B 262.7
(2.3)
P 		277.8
(3)
P 		231.2
(0.7)
P 		239.7
(1.1)
P 		160.6
(-2.8)
P 		156.1
(-3)
P 		122
C 445.5
(3)
P 		290.4
(-0.5)
P 		327.9
(0.3)
P 		229.7
(-1.9)
P 		248.4
(-1.4)
P 		179.6
(-3)
P 		266
avr 324.2
(3) 		316.4
(2.7) 		236.1
(-0.7) 		254
(0.1) 		183.6
(-2.8) 		179.7
(-3) 		145
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 158.4
(3)
P 		57.2
(-2.3)
P 		49.3
(-2.7)
P 		43
(-3)
P 		115
B 141.6
(3)
P 		57.2
(-2.1)
P 		41.5
(-3)
P 		45.1
(-2.8)
P 		100
C 148.1
(3)
P 		70.3
(-1.5)
P 		73.9
(-1.3)
P 		44.2
(-3)
P 		104
avr 149.4
(3) 		61.6
(-2) 		54.9
(-2.4) 		44.1
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 48.8
(-2.1)
P 		135.5
(3)
P 		32.5
(-3)
P 		74.2
(-0.6)
P 		42.8
(-2.4)
P 		49.5
(-2)
P 		103
B 91.4
(2.8)
P 		92.5
(3)
P 		56.2
(-3)
P 		63.5
(-1.8)
P 		65.3
(-1.5)
P 		58.2
(-2.7)
P 		36
C 165.1
(3)
P 		88.6
(-0.9)
P 		83.4
(-1.1)
P 		46.2
(-3)
P 		80.4
(-1.3)
P 		60.1
(-2.3)
P 		119
avr 101.8
(2.6) 		105.5
(3) 		57.4
(-2.8) 		61.3
(-2.3) 		62.8
(-2.2) 		55.9
(-3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181484_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1346
Sequence Type Exemplar sequence
Representative Public ID C45G3.2B NCBI
Target Description C45G3.2B /REP_DB=WormBase Gene ID /WP=CE15712 /TR=O17667 /GB=CAB07175.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026239(11), NM_001026236(11), NM_001030056(11), NM_001030057(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026239 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-15) (tag-15) mRNA, complete cds. 11/11 None
NM_001026236 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-15) (tag-15) mRNA, complete cds. 11/11 None
NM_001030056 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-15) (tag-15) mRNA, complete cds. 11/11 None
NM_001030057 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-15) (tag-15) mRNA, complete cds. 11/11 None
SNAP00000024095 ENSEMBL cdna:SNAP chromosome:CEL140:I:9202537:9203307:-1 11/11 None
F25H5.1f ENSEMBL cdna:known chromosome:CEL140:I:9189942:9218461:-1 gene:F25H5.1 11/11 None
F25H5.1a ENSEMBL cdna:known chromosome:CEL140:I:9191197:9218461:-1 gene:F25H5.1 11/11 None
F25H5.1c.2 ENSEMBL cdna:known chromosome:CEL140:I:9191197:9218463:-1 gene:F25H5.1 11/11 None
F25H5.1b ENSEMBL cdna:known chromosome:CEL140:I:9191197:9207426:-1 gene:F25H5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024115 5/11 Cross Hyb Matching Probes None
GENEFINDER00000024110 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
3565712 6 4 NM_001026236 180879_at (11), 181484_s_at (11)
NM_001026239 174855_at (11), 180879_at (11), 181484_s_at (11), 193324_at (11)
NM_001030056 180879_at (11), 181484_s_at (11)
NM_001030057 181483_at (11), 181484_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9202407-9207174(-) 100.0 100.0
Public Domain and Genome References
Ensembl F25H5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAJ30229 Hypothetical protein F25H5.1f [Caenorhabditis elegans] emb|CAI46551.1| Hypothetical protein F25H5.1f [Caenorhabditis elegans] ref|NP_001021410.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
blast CAB02980 Hypothetical protein F25H5.1a [Caenorhabditis elegans] emb|CAI46552.1| Hypothetical protein F25H5.1a [Caenorhabditis elegans] ref|NP_001025227.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
blast CAJ30228 Hypothetical protein F25H5.1c [Caenorhabditis elegans] emb|CAI46550.1| Hypothetical protein F25H5.1c [Caenorhabditis elegans] ref|NP_001021407.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
blast CAJ30230 Hypothetical protein F25H5.1b [Caenorhabditis elegans] emb|CAI46553.1| Hypothetical protein F25H5.1b [Caenorhabditis elegans] ref|NP_001025228.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.8E-10
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 2.2E-19
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 4.0E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-18
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.3E-10
Pfam IPR010442 EMBL-EBI PET 2.1E-44
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.8E-10
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 2.2E-19
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 4.0E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-18
Pfam IPR010442 EMBL-EBI PET 2.1E-44
Pfam IPR010442 EMBL-EBI PET 2.1E-44
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.8E-10
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 2.2E-19
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 4.0E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-18
Sequence
Target Sequence 
>C. ELEGANS:181484_S_AT
gtgtgcactgcaaaagcgatcgatcagatcacgaacttccacccaatcaagcactcaacg
tatacaatcgacttggaattcagccaccagccggaatgccccaatccggagttgcggagc
cagaagttcctggctcggttggacacgggtacgcatgggttccaccaggtctctcacgaa
agaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTGCACTGCAAAAGCGATCGATC 693 487 332 Antisense
TCGATCAGATCACGAACTTCCACCC 158 603 351 Antisense
CACCCAATCAAGCACTCAACGTATA 263 201 371 Antisense
GCACTCAACGTATACAATCGACTTG 127 309 382 Antisense
TCGACTTGGAATTCAGCCACCAGCC 499 601 399 Antisense
GAATGCCCCAATCCGGAGTTGCGGA 439 329 425 Antisense
GGAGTTGCGGAGCCAGAAGTTCCTG 39 517 439 Antisense
AGCCAGAAGTTCCTGGCTCGGTTGG 319 83 449 Antisense
CTCGGTTGGACACGGGTACGCATGG 67 233 465 Antisense
TGGACACGGGTACGCATGGGTTCCA 630 545 471 Antisense
TCCACCAGGTCTCTCACGAAAGAAG 318 589 492 Antisense
Sequence Source Affymetrix Proprietary Database