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[181483_at]

Description C45G3.2B /REP_DB=WormBase Gene ID /WP=CE15712 /TR=O17667 /GB=CAB07175.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 53      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 70.2
(3)
A 		49.3
(1)
A 		10
(-2.7)
A 		6.9
(-3)
A 		63
B 42.3
(2.1)
A 		9.9
(-3)
A 		48.2
(3)
A 		10.5
(-2.9)
A 		38
C 54.8
(1.3)
A 		74.8
(3)
A 		25.5
(-1.2)
A 		4.1
(-3)
A 		71
avr 55.8
(3) 		44.7
(1.6) 		27.9
(-0.4) 		7.2
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 30.6
(0.2)
A 		53.2
(3)
A 		8.2
(-2.7)
A 		5.6
(-3)
A 		10.3
(-2.4)
A 		43.5
(1.8)
A 		48
B 37.3
(1.3)
A 		48.9
(3)
A 		34.2
(0.9)
A 		21
(-1.1)
A 		7.7
(-3)
A 		18.5
(-1.4)
A 		41
C 67.4
(3)
A 		17.8
(-1.7)
A 		64.7
(2.7)
A 		4.4
(-3)
A 		34.9
(-0.1)
A 		11.9
(-2.3)
A 		63
avr 45.1
(3) 		40
(2.1) 		35.7
(1.4) 		10.3
(-3) 		17.6
(-1.7) 		24.6
(-0.5) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 25.6
(3)
A 		10.7
(-0.6)
A 		2.6
(-2.6)
A 		1
(-3)
A 		25
B 13.5
(3)
A 		2.4
(-2.9)
A 		11.2
(1.8)
A 		2.2
(-3)
A 		11
C 18.2
(2)
A 		21.5
(3)
A 		8.9
(-0.6)
A 		0.7
(-3)
A 		21
avr 19.1
(3) 		11.5
(0.4) 		7.6
(-0.9) 		1.3
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 5.6
(-1.6)
A 		18.9
(3)
A 		1.8
(-2.9)
A 		1.4
(-3)
A 		3.1
(-2.4)
A 		10.6
(0.2)
A 		18
B 13
(1.5)
A 		16.3
(3)
A 		8.3
(-0.6)
A 		5.6
(-1.9)
A 		3.1
(-3)
A 		6.9
(-1.3)
A 		13
C 25
(3)
A 		5.4
(-1.9)
A 		16.5
(0.9)
A 		0.9
(-3)
A 		11.3
(-0.4)
A 		4
(-2.2)
A 		24
avr 14.5
(3) 		13.5
(2.5) 		8.9
(0.2) 		2.6
(-3) 		5.8
(-1.4) 		7.2
(-0.7) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181483_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1346
Sequence Type Exemplar sequence
Representative Public ID C45G3.2B NCBI
Target Description C45G3.2B /REP_DB=WormBase Gene ID /WP=CE15712 /TR=O17667 /GB=CAB07175.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001030057(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001030057 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-15) (tag-15) mRNA, complete cds. 11/11 None
GENEFINDER00000024117 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9206523:9207243:-1 11/11 None
SNAP00000024096 ENSEMBL cdna:SNAP chromosome:CEL140:I:9206929:9207243:-1 11/11 None
F25H5.1b ENSEMBL cdna:known chromosome:CEL140:I:9191197:9207426:-1 gene:F25H5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
3565712 6 1 NM_001026236 180879_at (11), 181484_s_at (11)
NM_001026239 174855_at (11), 180879_at (11), 181484_s_at (11), 193324_at (11)
NM_001030056 180879_at (11), 181484_s_at (11)
NM_001030057 181483_at (11), 181484_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9202407-9207174(-) 100.0 100.0
Public Domain and Genome References
Ensembl F25H5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAJ30230 Hypothetical protein F25H5.1b [Caenorhabditis elegans] emb|CAI46553.1| Hypothetical protein F25H5.1b [Caenorhabditis elegans] ref|NP_001025228.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
blast CAB02980 Hypothetical protein F25H5.1a [Caenorhabditis elegans] emb|CAI46552.1| Hypothetical protein F25H5.1a [Caenorhabditis elegans] ref|NP_001025227.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
blast CAJ30228 Hypothetical protein F25H5.1c [Caenorhabditis elegans] emb|CAI46550.1| Hypothetical protein F25H5.1c [Caenorhabditis elegans] ref|NP_001021407.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
blast CAJ30230 Hypothetical protein F25H5.1b [Caenorhabditis elegans] emb|CAI46553.1| Hypothetical protein F25H5.1b [Caenorhabditis elegans] ref|NP_001025228.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 2.0E-44
blast T19958 hypothetical protein C45G3.2b - Caenorhabditis elegans 2.0E-44
blast CAJ30230 Hypothetical protein F25H5.1b [Caenorhabditis elegans] emb|CAI46553.1| Hypothetical protein F25H5.1b [Caenorhabditis elegans] ref|NP_001025228.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 4.0E-44
blast T19958 hypothetical protein C45G3.2b - Caenorhabditis elegans 4.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR010442 EMBL-EBI PET 2.1E-44
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.8E-10
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 2.2E-19
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 4.0E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-18
Sequence
Target Sequence 
>C. ELEGANS:181483_AT
gtgagaggaatggtggggcgtggtaagaagaaagagaagaacggtggagtaccaccatca
gtaccttcatctgcatctcaaccaccaccgtccactacaaaacatgcaaagattcttccg
agtttctcatgttcaccaccaatggagcgaaaggattctcgacccacgttgatcacagcc
aacacagctgatcattcggttggaagtccaccggcaagacgacaaccaccgaaaagagtg
ggaagtggtaaatcggcttcgaatgggccatctggagttgttagaacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGAGGAATGGTGGGGCGTGGTA 495 479 25 Antisense
GGTGGAGTACCACCATCAGTACCTT 536 497 67 Antisense
ACCATCAGTACCTTCATCTGCATCT 91 87 78 Antisense
GATTCTTCCGAGTTTCTCATGTTCA 484 431 135 Antisense
CTCATGTTCACCACCAATGGAGCGA 140 229 150 Antisense
TGGAGCGAAAGGATTCTCGACCCAC 625 547 167 Antisense
CCCACGTTGATCACAGCCAACACAG 20 259 187 Antisense
AGCCAACACAGCTGATCATTCGGTT 458 83 201 Antisense
TGGAAGTCCACCGGCAAGACGACAA 254 547 225 Antisense
AAATCGGCTTCGAATGGGCCATCTG 561 117 274 Antisense
GGGCCATCTGGAGTTGTTAGAACGG 502 491 289 Antisense
Sequence Source Affymetrix Proprietary Database