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[181482_at]

Description K02E7.4 /REP_DB=WormBase Gene ID /WP=CE11628 /TR=O17256 /GB=AAB71025.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 52.7
(-0.8)
A 		6.2
(-3)
A 		43.8
(-1.3)
A 		135.3
(3)
A 		129
B 48.5
(-3)
A 		87.3
(2)
A 		56.6
(-2)
A 		95.3
(3)
A 		47
C 13.7
(-3)
A 		59.4
(0.8)
A 		19.9
(-2.5)
A 		85.9
(3)
A 		72
avr 38.3
(-3) 		51
(-1.9) 		40.1
(-2.8) 		105.5
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 6.9
(-2.7)
A 		13.4
(-2.1)
A 		63.8
(3)
A 		38.9
(0.5)
A 		19.7
(-1.5)
A 		4.4
(-3)
A 		59
B 31.4
(-1)
A 		48.9
(2.5)
A 		51.4
(3)
A 		49.1
(2.5)
A 		39.4
(0.6)
A 		21.4
(-3)
A 		30
C 33.9
(-0.7)
A 		79.4
(3)
A 		6
(-3)
A 		48.5
(0.5)
A 		33.8
(-0.7)
A 		30.5
(-1)
A 		73
avr 24.1
(-1.9) 		47.2
(3) 		40.4
(1.6) 		45.5
(2.6) 		31
(-0.4) 		18.8
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 19.2
(2.8)
A 		1.3
(-3)
A 		11.5
(0.3)
A 		19.8
(3)
A 		19
B 15.5
(-1.3)
A 		21.6
(3)
A 		13.1
(-3)
A 		20.3
(2.1)
A 		9
C 4.5
(-3)
A 		17.1
(3)
A 		6.9
(-1.9)
A 		14.5
(1.8)
A 		13
avr 13.1
(-1) 		13.3
(-0.8) 		10.5
(-3) 		18.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.3
(-2.9)
A 		4.8
(-1.3)
A 		13.9
(3)
A 		9.9
(1.1)
A 		6
(-0.7)
A 		1.1
(-3)
A 		13
B 10.9
(-0.9)
A 		16.3
(3)
A 		12.5
(0.3)
A 		13
(0.6)
A 		16
(2.8)
A 		8
(-3)
A 		8
C 12.6
(-0.1)
A 		24.2
(3)
A 		1.5
(-3)
A 		9.8
(-0.8)
A 		10.9
(-0.5)
A 		10.2
(-0.7)
A 		23
avr 8.3
(-1.7) 		15.1
(3) 		9.3
(-1) 		10.9
(0.1) 		11
(0.2) 		6.4
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181482_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4798
Sequence Type Exemplar sequence
Representative Public ID K02E7.4 NCBI
Target Description K02E7.4 /REP_DB=WormBase Gene ID /WP=CE11628 /TR=O17256 /GB=AAB71025.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182271(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182271 NCBI Caenorhabditis elegans K02E7.4 (K02E7.4) mRNA, complete cds. 11/11 None
SNAP00000023029 ENSEMBL cdna:SNAP chromosome:CEL140:II:1072412:1075234:1 9/11 None
K02E7.4 ENSEMBL cdna:known chromosome:CEL140:II:1072412:1074733:1 gene:K02E7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1071179-1074732(+) 95.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02E7.4
Entrez Gene 353388 Entrez gene
SwissProt O17256 EMBL-EBI
WormBase CE33415 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO38628 Hypothetical protein K02E7.4 [Caenorhabditis elegans] ref|NP_872071.1| K02E7.4 [Caenorhabditis elegans] 1.0E-133
blast AAO38628 Hypothetical protein K02E7.4 [Caenorhabditis elegans] ref|NP_872071.1| K02E7.4 [Caenorhabditis elegans] 1.0E-63
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_872071.1 1 215-232
K02E7.4 1 215-232
Sequence
Target Sequence 
>C. ELEGANS:181482_AT
aattgtgcaagccagttctgccttctcgaggatttaaaatttcgatcatcaatgacgaac
aactattgcaaattcttgcggaagagccgctaaagggagtttacagggatagtaacaatt
ttcaaaactttttttcaaaacttttgaatttttcagaaaagaacgataacgcctatgaga
atggatggagtgcgagaataattacctggccagctgggccttataaagttattcctggcc
cgagtggcaatgacattggagaaactaatgtggatttttcggaaagactggacaactttg
tcagtgaatttcttaaaacacatgtgcagatgctcagtgttgaagagcaatataaattgt
ttatgaacagcacaaatttcatgttcaaaatttcaaatcttaggagtctaaatcctgatt
ttcaagttttttttgtgttaaaaaatttaaaaatgttttattttttgagtcaaattcaag
gcttcatgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGTGCAAGCCAGTTCTGCCTTC 445 179 356 Antisense
CAGTTCTGCCTTCTCGAGGATTTAA 50 205 368 Antisense
GAAGAGCCGCTAAAGGGAGTTTACA 339 339 436 Antisense
GAACGATAACGCCTATGAGAATGGA 418 347 516 Antisense
GTGCGAGAATAATTACCTGGCCAGC 420 479 545 Antisense
ATTACCTGGCCAGCTGGGCCTTATA 575 9 556 Antisense
GCCTTATAAAGTTATTCCTGGCCCG 414 281 573 Antisense
ATTCCTGGCCCGAGTGGCAATGACA 582 7 586 Antisense
GGACAACTTTGTCAGTGAATTTCTT 71 525 645 Antisense
CACATGTGCAGATGCTCAGTGTTGA 704 193 674 Antisense
GAGTCAAATTCAAGGCTTCATGTTC 645 399 822 Antisense
Sequence Source Affymetrix Proprietary Database