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[181481_at]

Description F17C11.7 /REP_DB=WormBase Gene ID /WP=CE05654 /TR=Q19518 /GB=CAA96629.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 76      6grp_total > 49      4grp_total > 54      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 516
1 2 3 4 range
A 1231.4
(3)
P 		1026.4
(0.1)
P 		1049.5
(0.4)
P 		812.1
(-3)
P 		419
B 1210.8
(3)
P 		1030.6
(0.8)
P 		936
(-0.4)
P 		721.4
(-3)
P 		489
C 1134.9
(3)
P 		920.2
(-0.1)
P 		766.5
(-2.3)
P 		715.3
(-3)
P 		420
avr 1192.4
(3) 		992.4
(0.3) 		917.3
(-0.7) 		749.6
(-3) 		443

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 713
1 2 3 4 5 6 range
A 1577.8
(3)
P 		1100
(-1.7)
P 		971.2
(-3)
P 		1112
(-1.6)
P 		1348.8
(0.7)
P 		1401
(1.3)
P 		607
B 1470.1
(3)
P 		1012.3
(-1.5)
P 		865
(-3)
P 		1185
(0.2)
P 		1160.1
(-0.1)
P 		1281.6
(1.1)
P 		605
C 1311.2
(3)
P 		930.3
(-3)
P 		1221.8
(1.6)
P 		1015
(-1.7)
P 		1105.5
(-0.2)
P 		1084.2
(-0.6)
P 		381
avr 1453
(3) 		1014.2
(-3) 		1019.3
(-2.9) 		1104
(-1.8) 		1204.8
(-0.4) 		1255.6
(0.3) 		439
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 330
1 2 3 4 range
A 448.4
(3)
P 		222.8
(-1.1)
P 		274.4
(-0.2)
P 		118.9
(-3)
P 		330
B 386.1
(3)
P 		254.5
(-0.4)
P 		216.9
(-1.4)
P 		153.7
(-3)
P 		232
C 375.7
(3)
P 		264.6
(0.4)
P 		267.1
(0.4)
P 		120.6
(-3)
P 		255
avr 403.4
(3) 		247.3
(-0.4) 		252.8
(-0.3) 		131.1
(-3) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 290.9
(-0.6)
P 		391.2
(2.5)
P 		211.5
(-3)
P 		282
(-0.8)
P 		407
(3)
P 		341.1
(1)
P 		196
B 511.5
(3)
P 		336.9
(-0.5)
P 		210.1
(-3)
P 		313.9
(-0.9)
P 		471.3
(2.2)
P 		477.9
(2.3)
P 		301
C 486
(3)
P 		283.9
(-1.3)
P 		311
(-0.7)
P 		204.1
(-3)
P 		357.7
(0.3)
P 		363
(0.4)
P 		282
avr 429.5
(3) 		337.3
(0) 		244.2
(-3) 		266.7
(-2.3) 		412
(2.4) 		394
(1.9) 		185
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181481_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12640
Sequence Type Exemplar sequence
Representative Public ID F17C11.7 NCBI
Target Description F17C11.7 /REP_DB=WormBase Gene ID /WP=CE05654 /TR=Q19518 /GB=CAA96629.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028642(11), NM_001028641(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028642 NCBI Caenorhabditis elegans F17C11.7b (F17C11.7) mRNA, complete cds. 11/11 None
NM_001028641 NCBI Caenorhabditis elegans F17C11.7a (F17C11.7) mRNA, complete cds. 11/11 None
SNAP00000033899 ENSEMBL cdna:SNAP chromosome:CEL140:V:10959672:10961120:-1 11/11 None
GENEFINDER00000033914 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10959672:10961406:-1 11/11 None
F17C11.7b ENSEMBL cdna:known chromosome:CEL140:V:10959497:10961408:-1 gene:F17C11.7 11/11 None
F17C11.7a ENSEMBL cdna:known chromosome:CEL140:V:10959672:10961408:-1 gene:F17C11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10959671-10961406(-) 100.0 100.0
Public Domain and Genome References
Ensembl F17C11.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH60789 Hypothetical protein F17C11.7b [Caenorhabditis elegans] ref|NP_001023813.1| F17C11.7b [Caenorhabditis elegans] 0.0
blast CAA96629 Hypothetical protein F17C11.7a [Caenorhabditis elegans] ref|NP_001023812.1| F17C11.7a [Caenorhabditis elegans] 0.0
blast CAE75134 Hypothetical protein CBG23063 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007245 EMBL-EBI Gpi16 subunit, GPI transamidase component 5.8E-72
Pfam IPR007245 EMBL-EBI Gpi16 subunit, GPI transamidase component 1.0E-126
Pfam IPR007245 EMBL-EBI Gpi16 subunit, GPI transamidase component 1.0E-126
Pfam IPR007245 EMBL-EBI Gpi16 subunit, GPI transamidase component 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023813.1 2 443-465,478-495
NP_001023812.1 2 459-481,494-511
F17C11.7b 2 443-465,478-495
F17C11.7a 2 459-481,494-511
SNAP00000033899 2 379-401,414-431
GENEFINDER00000033914 2 459-481,494-511
Sequence
Target Sequence 
>C. ELEGANS:181481_AT
taaaaatggtgttccccgtattgagaagatcttcaagaatagcaaaagcttggaggcgcc
tacactactacagtacaaaatgaaactttctgcaggacagacttgtgaacttactattcc
atttgataagcaacttttgagactagaacaatacccaccagatgcaaatcatggaatgca
tattccagcagcaagtgtctacattcaaaagagcacctcaacatacacaattcattcgaa
tgccatcttggtccttctaccagtccccgatttctcaatgccattcaatgtgatttgttt
cgttgccaccgcttttgctctagtcttcggaccaattcaactttattcaacactttggtt
ggcaccggtcgtcaaaaagtcacaatgggggcggaaaattcatcgggcgattcttttggc
tatcattgcattctgcctatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAAATGGTGTTCCCCGTATTGAG 483 627 1086 Antisense
GCAAAAGCTTGGAGGCGCCTACACT 360 285 1127 Antisense
GACTAGAACAATACCCACCAGATGC 26 371 1226 Antisense
TTCCAGCAGCAAGTGTCTACATTCA 460 701 1268 Antisense
GCACCTCAACATACACAATTCATTC 315 315 1298 Antisense
TTCGAATGCCATCTTGGTCCTTCTA 159 693 1320 Antisense
AATGTGATTTGTTTCGTTGCCACCG 670 163 1372 Antisense
CTTTTGCTCTAGTCTTCGGACCAAT 178 223 1397 Antisense
CAACACTTTGGTTGGCACCGGTCGT 670 135 1433 Antisense
TCATCGGGCGATTCTTTTGGCTATC 557 621 1485 Antisense
GGCTATCATTGCATTCTGCCTATAT 562 537 1503 Antisense
Sequence Source Affymetrix Proprietary Database