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[181480_at]

Description C15F1.2 /REP_DB=WormBase Gene ID /WP=CE23545 /TR=Q9N5X9 /GB=AAF39754.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      6grp_highest_nonorm > 80      6grp_total > 60      4grp_total > 50      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 382
1 2 3 4 range
A 4.3
(-3)
A 		385.8
(3)
P 		175.2
(-0.3)
P 		55
(-2.2)
A 		382
B 23.4
(-2.8)
A 		278.1
(3)
P 		246.9
(2.3)
P 		15.5
(-3)
A 		263
C 12
(-3)
A 		281.8
(3)
P 		278.4
(2.9)
P 		12.5
(-3)
A 		270
avr 13.2
(-3) 		315.2
(3) 		233.5
(1.4) 		27.7
(-2.7) 		302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 351
1 2 3 4 5 6 range
A 198
(-0.2)
P 		170
(-0.8)
P 		298.8
(1.9)
P 		354.5
(3)
P 		154.5
(-1.1)
P 		59.6
(-3)
P 		295
B 238.4
(0.4)
P 		149
(-1.2)
P 		245.7
(0.5)
P 		381.6
(3)
P 		178.6
(-0.7)
P 		48.8
(-3)
P 		333
C 238.5
(0.3)
P 		161.7
(-1)
P 		237.5
(0.3)
P 		395.4
(3)
P 		146.5
(-1.3)
P 		44.5
(-3)
P 		351
avr 225
(0.2) 		160.2
(-1) 		260.7
(0.9) 		377.2
(3) 		159.9
(-1) 		51
(-3) 		326
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 1.6
(-3)
A 		83.7
(3)
P 		45.8
(0.2)
P 		8
(-2.5)
A 		82
B 7.5
(-2.6)
A 		68.7
(3)
P 		57.2
(1.9)
P 		3.3
(-3)
A 		65
C 4
(-2.9)
A 		81
(2)
P 		97
(3)
P 		2.1
(-3)
A 		95
avr 4.4
(-3) 		77.8
(3) 		66.7
(2.1) 		4.5
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 36.5
(-1.2)
P 		60.5
(0.7)
P 		65.1
(1)
P 		89.9
(3)
P 		46.6
(-0.4)
P 		14.5
(-3)
P 		75
B 83
(1.7)
P 		49.6
(-0.7)
P 		59.7
(0)
P 		101.1
(3)
P 		72.6
(0.9)
P 		18.2
(-3)
P 		83
C 88.4
(3)
P 		49.3
(-0.2)
P 		60.5
(0.7)
P 		79.5
(2.3)
P 		47.4
(-0.3)
P 		14.9
(-3)
P 		74
avr 69.3
(1.3) 		53.1
(0) 		61.8
(0.7) 		90.2
(3) 		55.5
(0.2) 		15.9
(-3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181480_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4710
Sequence Type Exemplar sequence
Representative Public ID C15F1.2 NCBI
Target Description C15F1.2 /REP_DB=WormBase Gene ID /WP=CE23545 /TR=Q9N5X9 /GB=AAF39754.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063032(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063032 NCBI Caenorhabditis elegans C15F1.2 (C15F1.2) mRNA, complete cds. 11/11 None
SNAP00000007589 ENSEMBL cdna:SNAP chromosome:CEL140:II:6985889:6988377:1 11/11 None
GENEFINDER00000007592 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6979937:6988377:1 11/11 None
C15F1.2 ENSEMBL cdna:known chromosome:CEL140:II:6979937:6988497:1 gene:C15F1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6979932-6988373(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15F1.2
Entrez Gene 174143 Entrez gene
SwissProt Q9N5X9 EMBL-EBI
WormBase CE23545 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39754 Hypothetical protein C15F1.2 [Caenorhabditis elegans] ref|NP_495433.1| C15F1.2 [Caenorhabditis elegans] 0.0
blast CAE66007 Hypothetical protein CBG11198 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181480_AT
gctgaatctgctgagagccttttgtataaggacgacggagtgtgctcacaaaaagatgga
gacaaagtaattgagctttacgagtatatgattaaaagaaatgataagctcagaatctgt
ttagataataagaacgaaaaatattttgaagattcagtttgtcttgcttatcctgaacac
aaacgccatgaatatgatgattctctccggcgacttttgaatacatcgtttgaatattca
aaatctagagaatgtttccatgatgctaatttgattcaagagaagtgtacacatctcaga
gattgttgtccgaactttgatgaatgccgtgaagaaactttcgaggttgaagtggaaaga
acaattatcagcttgacagctacaataaatgagatcaaacaagaatgtgttaagagaaaa
gccaaagaagctgttaagaatgttgttcgacaactccttctaaatacagatgctggtcaa
aaacttcaagaaattgcgcaacttggtttagacatttctcggggagcccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGAATCTGCTGAGAGCCTTTTGT 488 295 1858 Antisense
AAGGACGACGGAGTGTGCTCACAAA 173 161 1885 Antisense
GATTCAGTTTGTCTTGCTTATCCTG 473 431 2008 Antisense
GCTTATCCTGAACACAAACGCCATG 76 305 2023 Antisense
GAATATGATGATTCTCTCCGGCGAC 71 327 2047 Antisense
CTCTCCGGCGACTTTTGAATACATC 355 229 2060 Antisense
CATCTCAGAGATTGTTGTCCGAACT 364 213 2149 Antisense
GTCCGAACTTTGATGAATGCCGTGA 280 475 2165 Antisense
TTCGACAACTCCTTCTAAATACAGA 155 697 2303 Antisense
GAAATTGCGCAACTTGGTTTAGACA 97 365 2347 Antisense
TTTAGACATTTCTCGGGGAGCCCGA 558 669 2364 Antisense
Sequence Source Affymetrix Proprietary Database