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[181479_at] 7TM chemoreceptor, srw family

Description F18E3.5 /REP_DB=WormBase Gene ID /WP=CE07081 /TR=Q19562 /GB=AAK18937.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 19      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 10.7
(-2.9)
A 		23.6
(-1.8)
A 		9.7
(-3)
A 		77.9
(3)
A 		68
B 8.2
(-3)
A 		35.8
(3)
A 		21.3
(-0.2)
A 		24.7
(0.6)
A 		28
C 33.9
(0.3)
A 		24.5
(-1)
A 		9.7
(-3)
A 		54.1
(3)
A 		44
avr 17.6
(-2.4) 		28
(-0.8) 		13.6
(-3) 		52.2
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 16.9
(0.2)
A 		9.5
(-1.5)
A 		29.5
(3)
A 		8.8
(-1.7)
A 		2.9
(-3)
A 		3.4
(-2.9)
A 		27
B 4.6
(-2.6)
A 		24.2
(2)
A 		5.2
(-2.5)
A 		28.3
(3)
A 		18.6
(0.7)
A 		3
(-3)
A 		25
C 13.1
(-1.8)
A 		59.2
(3)
A 		40.5
(1.1)
A 		42.8
(1.3)
A 		1.4
(-3)
A 		16
(-1.5)
A 		58
avr 11.5
(-2) 		31
(3) 		25.1
(1.5) 		26.6
(1.9) 		7.6
(-3) 		7.5
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.9
(-2.1)
A 		5.1
(-1.2)
A 		2.5
(-3)
A 		11.4
(3)
A 		9
B 2.6
(-3)
A 		8.8
(3)
A 		4.9
(-0.8)
A 		5.3
(-0.4)
A 		6
C 11.2
(3)
A 		7
(-0.2)
A 		3.4
(-3)
A 		9.1
(1.4)
A 		8
avr 5.9
(-0.2) 		7
(1.1) 		3.6
(-3) 		8.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 3.1
(-0.5)
A 		3.4
(-0.2)
A 		6.4
(3)
A 		2.2
(-1.5)
A 		0.9
(-2.9)
A 		0.8
(-3)
A 		6
B 1.6
(-2.6)
A 		8.1
(3)
A 		1.3
(-2.8)
A 		7.5
(2.5)
A 		7.5
(2.5)
A 		1.1
(-3)
A 		7
C 4.9
(-1.5)
A 		18
(3)
A 		10.3
(0.4)
A 		8.6
(-0.2)
A 		0.5
(-3)
A 		5.4
(-1.3)
A 		18
avr 3.2
(-2.4) 		9.8
(3) 		6
(-0.1) 		6.1
(-0) 		3
(-2.5) 		2.4
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181479_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11902
Sequence Type Exemplar sequence
Representative Public ID F18E3.5 NCBI
Target Description F18E3.5 /REP_DB=WormBase Gene ID /WP=CE07081 /TR=Q19562 /GB=AAK18937.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072504(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072504 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-69) (srw-69) mRNA, complete cds. 11/11 None
SNAP00000036722 ENSEMBL cdna:SNAP chromosome:CEL140:V:7429918:7431389:-1 11/11 None
F18E3.5 ENSEMBL cdna:known chromosome:CEL140:V:7429918:7431572:-1 gene:F18E3.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036728 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7429918-7431573(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-69
Ensembl F18E3.5
Entrez Gene 184641 Entrez gene
SwissProt Q19562 EMBL-EBI
WormBase CE07081 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504905 Serpentine Receptor, class W family member (srw-69) [Caenorhabditis elegans] gb|AAK18937.1| Serpentine receptor, class w protein 69 [Caenorhabditis elegans] 0.0
blast NP_504905 Serpentine Receptor, class W family member (srw-69) [Caenorhabditis elegans] gb|AAK18937.1| Serpentine receptor, class w protein 69 [Caenorhabditis elegans] 1.0E-179
blast NP_001023818 Serpentine Receptor, class W family member (srw-68) [Caenorhabditis elegans] gb|AAW88402.1| Serpentine receptor, class w protein 68, isoform b [Caenorhabditis elegans] 1.0E-124
blast NP_001023817 Serpentine Receptor, class W family member (srw-68) [Caenorhabditis elegans] gb|AAK18938.3| Serpentine receptor, class w protein 68, isoform a [Caenorhabditis elegans] 1.0E-104
blast NP_001023818 Serpentine Receptor, class W family member (srw-68) [Caenorhabditis elegans] gb|AAW88402.1| Serpentine receptor, class w protein 68, isoform b [Caenorhabditis elegans] 1.0E-103
blast NP_001023817 Serpentine Receptor, class W family member (srw-68) [Caenorhabditis elegans] gb|AAK18938.3| Serpentine receptor, class w protein 68, isoform a [Caenorhabditis elegans] 1.0E-83
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504905.1 7 36-58,65-87,125-144,156-178,213-235,280-302,317-339
F18E3.5 7 36-58,65-87,125-144,156-178,213-235,280-302,317-339
SNAP00000036722 6 7-29,64-83,95-117,152-174,219-241,256-278
Sequence
Target Sequence 
>C. ELEGANS:181479_AT
ggacgcctccgaaagaatgtactcaatatcccttgggctttacattacctctgtacaagt
cctctttggacgacatatatttgattgatgcttccgttgcactaattgtgtttagcatca
ttgatggattattgaagataattcctgcgctcatgttcccggtcattacttttctattga
tcaaagaactaaggacagctgaatcgattagacgaaaaacttcacaaggaagttttaaga
aagacagtgcagcttctgagcaaactacaaaacttgtgattcttatggcaataacattta
ttgccgccgagcttccaattggagcgatctatgtcgcacagggcgttttgataaaccagc
ctgtaattgttgagattacatacgagcttgtggatgtattgggaatatttgtagcgatca
atgcaactacccattgtttgatctgccttggtgtatcatcacagtatcgacgaactgtga
aagcgcttttcaagttttgcatcaaaactactaaacccctagctacaggaacagctctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGCCTCCGAAAGAATGTACTCA 356 523 575 Antisense
ATATCCCTTGGGCTTTACATTACCT 133 9 600 Antisense
ACATTACCTCTGTACAAGTCCTCTT 528 105 616 Antisense
GATTGATGCTTCCGTTGCACTAATT 235 435 657 Antisense
GAAGATAATTCCTGCGCTCATGTTC 79 339 708 Antisense
GACAGTGCAGCTTCTGAGCAAACTA 629 367 817 Antisense
ATAACATTTATTGCCGCCGAGCTTC 604 23 865 Antisense
GAGCGATCTATGTCGCACAGGGCGT 371 385 896 Antisense
GATCTGCCTTGGTGTATCATCACAG 368 419 1014 Antisense
GAAAGCGCTTTTCAAGTTTTGCATC 414 359 1053 Antisense
ACCCCTAGCTACAGGAACAGCTCTC 515 87 1089 Antisense
Sequence Source Affymetrix Proprietary Database