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[181477_at]

Description T04B8.2 /REP_DB=WormBase Gene ID /WP=CE18190 /TR=O44848 /GB=AAB95008.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 20.3
(-2.8)
A 		20.8
(-2.8)
A 		18.7
(-3)
A 		76.8
(3)
A 		58
B 1
(-3)
A 		22.5
(3)
A 		4
(-2.2)
A 		19.6
(2.2)
A 		22
C 6.9
(-2.4)
A 		7.4
(-2.4)
A 		1.2
(-3)
A 		59.1
(3)
P 		58
avr 9.4
(-2.8) 		16.9
(-1.8) 		8
(-3) 		51.8
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 9
(-3)
A 		12.8
(-2.2)
A 		29.8
(1.3)
A 		24.2
(0.1)
A 		15.3
(-1.7)
A 		38.3
(3)
A 		29
B 9.9
(1.1)
A 		7.1
(-0.4)
A 		9.7
(1)
A 		2.9
(-2.7)
A 		2.3
(-3)
A 		13.3
(3)
A 		11
C 0.9
(-3)
A 		2.7
(-2.4)
A 		3.6
(-2.1)
A 		5.5
(-1.5)
A 		5.3
(-1.6)
A 		19.3
(3)
A 		18
avr 6.6
(-3) 		7.5
(-2.7) 		14.4
(-0.2) 		10.9
(-1.5) 		7.6
(-2.6) 		23.6
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 7.4
(-0.4)
A 		4.5
(-3)
A 		4.9
(-2.6)
A 		11.2
(3)
A 		7
B 0.3
(-3)
A 		5.6
(3)
A 		0.9
(-2.3)
A 		4.2
(1.4)
A 		5
C 2.3
(-1.8)
A 		2.1
(-1.9)
A 		0.4
(-3)
A 		10
(3)
P 		10
avr 3.3
(-1.9) 		4.1
(-1.1) 		2.1
(-3) 		8.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.7
(-3)
A 		4.5
(-0.8)
A 		6.5
(0.8)
A 		6.1
(0.5)
A 		4.6
(-0.7)
A 		9.3
(3)
A 		8
B 3.5
(0.9)
A 		2.4
(-0.7)
A 		2.4
(-0.7)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		5
(3)
A 		4
C 0.3
(-3)
A 		0.8
(-2.5)
A 		0.9
(-2.4)
A 		1.1
(-2.2)
A 		1.7
(-1.6)
A 		6.4
(3)
A 		6
avr 1.8
(-3) 		2.6
(-2.1) 		3.3
(-1.2) 		2.7
(-1.9) 		2.4
(-2.3) 		6.9
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181477_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4590
Sequence Type Exemplar sequence
Representative Public ID T04B8.2 NCBI
Target Description T04B8.2 /REP_DB=WormBase Gene ID /WP=CE18190 /TR=O44848 /GB=AAB95008.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061374(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061374 NCBI Caenorhabditis elegans T04B8.2 (T04B8.2) mRNA, complete cds. 11/11 None
T04B8.2 ENSEMBL cdna:known chromosome:CEL140:II:630081:631985:1 gene:T04B8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021879 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:630080-631903(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04B8.2
Entrez Gene 173455 Entrez gene
SwissProt O44848 EMBL-EBI
WormBase CE18190 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95008 Hypothetical protein T04B8.2 [Caenorhabditis elegans] ref|NP_493775.1| T04B8.2 [Caenorhabditis elegans] 0.0
blast AAB71199 Hypothetical protein C24H12.1 [Caenorhabditis elegans] ref|NP_493736.1| C24H12.1 [Caenorhabditis elegans] 3.0E-82
blast NP_493753 T27A1.2 [Caenorhabditis elegans] gb|AAB71043.2| Hypothetical protein T27A1.2 [Caenorhabditis elegans] 5.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.8E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493775.1 1 5-22
T04B8.2 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:181477_AT
ttgatcgggatctattcttcggagaatttcgatccgtgttaagccacccgttaattcgaa
aatgccatcatctcaaaattcttggagataattcgtacattacgacagaagatatggaat
ttattttgaagaatttcgatttgaaatatgaatttctgactcgctgtctgcaaaaaacaa
tgattgattttaaattgttggtcaatcttccacgattagagttttggaaagactcagatt
taacattggaccatttaaaaatgatgaattgcaaaacgattcgatttggtaaaaatgcaa
tcgtaccgaaacaactgaacgactacatttttcactggttagccgggaacttgtcaaaat
tgagaagatttcaaatgaaatggtggctcgatagtatttggatggatgatatatttgatg
gattactgcattctgcatggaatccgaaacgacgggctagaatcttctgcgatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGATCGGGATCTATTCTTCGGAGA 612 703 371 Antisense
GAATTTCGATCCGTGTTAAGCCACC 398 323 394 Antisense
TAAGCCACCCGTTAATTCGAAAATG 675 635 410 Antisense
TTTCTGACTCGCTGTCTGCAAAAAA 330 671 523 Antisense
AATTGTTGGTCAATCTTCCACGATT 347 179 563 Antisense
GACTCAGATTTAACATTGGACCATT 529 373 601 Antisense
GACTACATTTTTCACTGGTTAGCCG 439 355 691 Antisense
GGTGGCTCGATAGTATTTGGATGGA 303 499 752 Antisense
GATGGATTACTGCATTCTGCATGGA 674 407 787 Antisense
GCATGGAATCCGAAACGACGGGCTA 629 309 805 Antisense
GACGGGCTAGAATCTTCTGCGATGA 467 377 821 Antisense
Sequence Source Affymetrix Proprietary Database