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[181476_s_at]

Description F07A11.3 /REP_DB=WormBase Gene ID /WP=CE03145 /TR=Q19131 /GB=CAA91316.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 66      4grp_high_8_8 > 52      6grp_total > 67      4grp_total > 51      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 211.1
(-0)
P 		282.6
(3)
P 		231
(0.8)
A 		140.1
(-3)
A 		143
B 275.6
(2.2)
P 		294.3
(3)
M 		284.2
(2.6)
P 		154.2
(-3)
P 		140
C 281.3
(2.7)
P 		287
(3)
P 		274
(2.2)
P 		186.8
(-3)
A 		100
avr 256
(1.5) 		288
(3) 		263.1
(1.8) 		160.4
(-3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 288
(1)
P 		247.8
(-0.5)
P 		258.5
(-0.1)
P 		183.7
(-3)
P 		237.8
(-0.9)
P 		339.9
(3)
P 		156
B 184.2
(-2.7)
P 		174.4
(-3)
M 		200.9
(-2.3)
P 		240.4
(-1.2)
P 		213.3
(-2)
P 		399
(3)
P 		225
C 267.7
(-0.8)
P 		220.7
(-3)
P 		283.1
(-0)
P 		347.1
(3)
P 		244.3
(-1.9)
P 		329.2
(2.2)
P 		126
avr 246.6
(-1.6) 		214.3
(-3) 		247.5
(-1.6) 		257.1
(-1.2) 		231.8
(-2.3) 		356
(3) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 76.9
(3)
P 		61.4
(1.4)
P 		60.4
(1.2)
A 		20.5
(-3)
A 		56
B 87.9
(3)
P 		72.7
(1.3)
M 		65.8
(0.6)
P 		32.9
(-3)
P 		55
C 93.1
(2.8)
P 		82.5
(1.8)
P 		95.5
(3)
P 		31.5
(-3)
A 		64
avr 86
(3) 		72.2
(1.6) 		73.9
(1.7) 		28.3
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 53.1
(-2.1)
P 		88.1
(3)
P 		56.3
(-1.6)
P 		46.6
(-3)
P 		71.8
(0.6)
P 		82.8
(2.2)
P 		42
B 64.1
(-2.1)
P 		58.1
(-2.4)
M 		48.8
(-3)
P 		63.7
(-2.1)
P 		86.6
(-0.7)
P 		148.8
(3)
P 		100
C 99.2
(1.5)
P 		67.3
(-3)
P 		72.1
(-2.3)
P 		69.8
(-2.7)
P 		79.1
(-1.3)
P 		110.2
(3)
P 		43
avr 72.1
(-1.6) 		71.2
(-1.7) 		59.1
(-3) 		60
(-2.9) 		79.2
(-0.8) 		113.9
(3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181476_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3820
Sequence Type Exemplar sequence
Representative Public ID F07A11.3 NCBI
Target Description F07A11.3 /REP_DB=WormBase Gene ID /WP=CE03145 /TR=Q19131 /GB=CAA91316.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064080(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064080 NCBI Caenorhabditis elegans Nuclear Pore complex Protein family member (npp-5) (npp-5) mRNA, complete cds. 11/11 A 
SNAP00000044553 ENSEMBL cdna:SNAP chromosome:CEL140:II:11596828:11599708:-1 11/11 None
GENEFINDER00000044561 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11596828:11599708:-1 11/11 None
F07A11.3 ENSEMBL cdna:known chromosome:CEL140:II:11596682:11599712:-1 gene:F07A11.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11596824-11599705(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol npp-5
Ensembl F07A11.3
Entrez Gene 174779 Entrez gene
SwissProt Q19131 EMBL-EBI
WormBase CE03145 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91316 Hypothetical protein F07A11.3 [Caenorhabditis elegans] ref|NP_496481.1| Nuclear Pore complex Protein family member (npp-5) [Caenorhabditis elegans] 0.0
blast CAE59465 Hypothetical protein CBG02849 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181476_S_AT
aaaacctggatcgcagctggcaattaataaaatcgaacacgcggctctggaattttatgg
gctctgctctttcgtggatgtgaacaacttcatgatcactattgctctgaaacttgggct
catgttcaagtacacaccgatcactgatgatgagctttccatgatcggaggagtcaaacg
actcgacaacaccacagctgctgactgggaagcttcactgagagtccgagctcgtgctga
gcaaactctgcgggaagaggtgctcaaaaagagagccgccgagcataatacgcgagttgg
aatggttcaacaacatttagatactgttcttccgatgctccgtgggctggttaacaatat
tggtgtgcgcccggagtactttttgagcccacgtgctaatggagatccaatgcgtgtaca
ccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACCTGGATCGCAGCTGGCAATT 408 131 1836 Antisense
AAAATCGAACACGCGGCTCTGGAAT 281 133 1864 Antisense
GGCTCTGGAATTTTATGGGCTCTGC 523 537 1878 Antisense
GCTCTGCTCTTTCGTGGATGTGAAC 66 301 1896 Antisense
GACAACACCACAGCTGCTGACTGGG 449 365 2020 Antisense
TCACTGAGAGTCCGAGCTCGTGCTG 650 621 2050 Antisense
CTCGTGCTGAGCAAACTCTGCGGGA 224 233 2066 Antisense
GAGCCGCCGAGCATAATACGCGAGT 599 385 2108 Antisense
GATGCTCCGTGGGCTGGTTAACAAT 117 415 2169 Antisense
GTACTTTTTGAGCCCACGTGCTAAT 682 459 2211 Antisense
ATGGAGATCCAATGCGTGTACACCG 116 53 2234 Antisense
Sequence Source Affymetrix Proprietary Database