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[181473_s_at]

Description C15C6.2A /REP_DB=WormBase Gene ID /WP=CE18502 /TR=Q9XVT4 /GB=CAB02727.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 48      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.1
(-3)
A 		5.2
(-2.9)
A 		14.3
(3)
A 		6.6
(-2)
A 		9
B 4.2
(-3)
A 		6.3
(3)
A 		4.8
(-1.3)
A 		4.6
(-1.9)
A 		2
C 5.2
(-1.7)
A 		10.2
(3)
A 		4.3
(-2.5)
A 		3.8
(-3)
A 		6
avr 4.8
(-3) 		7.2
(1.8) 		7.8
(3) 		5
(-2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 625
1 2 3 4 5 6 range
A 5.9
(-3)
A 		4.1
(-3)
A 		4.1
(-3)
A 		6.3
(-3)
A 		216.3
(-1)
A 		627.4
(3)
P 		623
B 2.9
(-3)
A 		3.4
(-3)
A 		4.2
(-3)
A 		7.2
(-2.9)
A 		262.5
(0.4)
M 		462
(3)
P 		459
C 4.8
(-3)
A 		3.9
(-3)
A 		3.8
(-3)
A 		6.2
(-3)
A 		197.4
(-0.7)
P 		507.5
(3)
P 		504
avr 4.5
(-3) 		3.8
(-3) 		4
(-3) 		6.6
(-3) 		225.4
(-0.5) 		532.3
(3) 		529
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.9
(-1)
A 		1.1
(-2.8)
A 		3.7
(3)
A 		1
(-3)
A 		3
B 1.3
(0)
A 		1.6
(3)
A 		1.1
(-2)
A 		1
(-3)
A 		1
C 1.7
(-0.1)
A 		2.9
(3)
A 		1.5
(-0.7)
A 		0.6
(-3)
A 		2
avr 1.6
(0.5) 		1.9
(2) 		2.1
(3) 		0.9
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.5
(-3)
A 		0.9
(-3)
A 		1.6
(-3)
A 		65.3
(-0.5)
A 		152.8
(3)
P 		152
B 1
(-3)
A 		1.1
(-3)
A 		1
(-3)
A 		1.9
(-3)
A 		106.6
(0.7)
M 		172.3
(3)
P 		171
C 1.8
(-3)
A 		1.2
(-3)
A 		1
(-3)
A 		1.2
(-3)
A 		63.9
(-0.8)
P 		169.9
(3)
P 		169
avr 1.3
(-3) 		1.3
(-3) 		1
(-3) 		1.6
(-3) 		78.6
(-0.2) 		165
(3) 		164
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181473_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.820
Sequence Type Exemplar sequence
Representative Public ID C15C6.2A NCBI
Target Description C15C6.2A /REP_DB=WormBase Gene ID /WP=CE18502 /TR=Q9XVT4 /GB=CAB02727.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060679(11), NM_060680(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060679 NCBI Caenorhabditis elegans C15C6.2b (C15C6.2) mRNA, complete cds. 11/11 A 
NM_060680 NCBI Caenorhabditis elegans C15C6.2a (C15C6.2) mRNA, complete cds. 11/11 None
SNAP00000035688 ENSEMBL cdna:SNAP chromosome:CEL140:I:12212026:12213901:1 11/11 None
GENEFINDER00000035692 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12212026:12214075:1 11/11 None
C15C6.2b ENSEMBL cdna:known chromosome:CEL140:I:12211922:12213904:1 gene:C15C6.2 11/11 A 
C15C6.2a ENSEMBL cdna:known chromosome:CEL140:I:12212026:12213863:1 gene:C15C6.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12211956-12213630(+) 100.0 100.0
Public Domain and Genome References
Ensembl C15C6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02728 Hypothetical protein C15C6.2b [Caenorhabditis elegans] ref|NP_493080.1| C15C6.2b [Caenorhabditis elegans] 1.0E-140
blast CAB02728 Hypothetical protein C15C6.2b [Caenorhabditis elegans] ref|NP_493080.1| C15C6.2b [Caenorhabditis elegans] 1.0E-139
blast CAB02727 Hypothetical protein C15C6.2a [Caenorhabditis elegans] ref|NP_493081.1| C15C6.2a [Caenorhabditis elegans] 1.0E-104
blast CAB02728 Hypothetical protein C15C6.2b [Caenorhabditis elegans] ref|NP_493080.1| C15C6.2b [Caenorhabditis elegans] 6.0E-94
blast CAB02727 Hypothetical protein C15C6.2a [Caenorhabditis elegans] ref|NP_493081.1| C15C6.2a [Caenorhabditis elegans] 1.0E-93
Sequence
Target Sequence 
>C. ELEGANS:181473_S_AT
caagtacatcactcttccaaatcgccacagcttcacagtggattccaaggatgtgttcca
acgtggtcaggtgctcagctacatccgatccaaagcacccttcctgctcgaacatatctc
cgaggcaaaggagcgattgataaccgtgacgtcacgcggtttgatgatcatttacgagaa
tgacgaccacggattggtgattgatttgcgatcggccaggaatgttctgtgcactgctga
tcgttcgaaaaagcagcgtcatttccgctgtcacatcaaaatccgcatgcaacgtggcaa
tgttcacctctttgtcggccataatgatgttcacaagtggacgtgcgcgattatgagagc
cgccggaaagtgcttgccgtctacagagccccgcgatgatggaagccttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGTACATCACTCTTCCAAATCGC 213 185 72 Antisense
GTGTTCCAACGTGGTCAGGTGCTCA 294 485 124 Antisense
TCAGCTACATCCGATCCAAAGCACC 493 625 146 Antisense
GTGACGTCACGCGGTTTGATGATCA 414 483 217 Antisense
GATCGGCCAGGAATGTTCTGTGCAC 252 419 281 Antisense
TTCTGTGCACTGCTGATCGTTCGAA 77 695 296 Antisense
GTCATTTCCGCTGTCACATCAAAAT 647 467 329 Antisense
CAACGTGGCAATGTTCACCTCTTTG 143 187 361 Antisense
CACCTCTTTGTCGGCCATAATGATG 655 201 376 Antisense
TGAGAGCCGCCGGAAAGTGCTTGCC 241 569 425 Antisense
AGCCCCGCGATGATGGAAGCCTTAA 265 83 458 Antisense
Sequence Source Affymetrix Proprietary Database