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[181472_at]

Description T02H6.8 /REP_DB=WormBase Gene ID /WP=CE21144 /TR=Q9N5F0 /GB=AAF39960.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 41      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 40.7
(0.5)
A 		16.6
(-3)
A 		23.4
(-2)
A 		58.3
(3)
A 		42
B 11.4
(-2.4)
A 		16.9
(2.4)
A 		17.6
(3)
A 		10.7
(-3)
A 		7
C 10.7
(-0.6)
A 		15.3
(3)
A 		7.7
(-3)
A 		12.5
(0.8)
A 		8
avr 20.9
(-0.4) 		16.3
(-2.9) 		16.2
(-3) 		27.2
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 25.5
(3)
A 		14.9
(-0.7)
A 		13.6
(-1.2)
A 		11.1
(-2.1)
A 		13.9
(-1.1)
A 		8.4
(-3)
A 		17
B 20.1
(-1.2)
A 		29.9
(0.1)
A 		7.2
(-3)
A 		50.9
(3)
A 		8.8
(-2.8)
A 		8.4
(-2.8)
A 		44
C 13.8
(-2.4)
A 		10.6
(-2.7)
A 		74.4
(3)
A 		9
(-2.9)
A 		7.4
(-3)
A 		15.9
(-2.2)
A 		67
avr 19.8
(-0.3) 		18.5
(-0.6) 		31.7
(3) 		23.7
(0.8) 		10
(-3) 		10.9
(-2.8) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.8
(3)
A 		3.6
(-3)
A 		6.1
(-1.7)
A 		8.5
(-0.4)
A 		11
B 3.6
(1.1)
A 		4.2
(3)
A 		4.1
(2.7)
A 		2.3
(-3)
A 		2
C 3.5
(0.7)
A 		4.4
(3)
A 		2.7
(-1.4)
A 		2.1
(-3)
A 		2
avr 7.3
(3) 		4.1
(-3) 		4.3
(-2.6) 		4.3
(-2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.7
(1.9)
A 		5.3
(3)
A 		3
(-1.2)
A 		2.8
(-1.5)
A 		4.2
(1)
A 		2
(-3)
A 		3
B 7
(-0.3)
A 		10
(1.2)
A 		1.7
(-3)
A 		13.5
(3)
A 		3.6
(-2)
A 		3.1
(-2.3)
A 		12
C 5.1
(-1.8)
A 		3.2
(-2.5)
A 		18.9
(3)
A 		1.8
(-3)
A 		2.4
(-2.8)
A 		5.3
(-1.8)
A 		17
avr 5.6
(-0.1) 		6.2
(0.7) 		7.9
(3) 		6
(0.5) 		3.4
(-3) 		3.5
(-2.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181472_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4089
Sequence Type Exemplar sequence
Representative Public ID T02H6.8 NCBI
Target Description T02H6.8 /REP_DB=WormBase Gene ID /WP=CE21144 /TR=Q9N5F0 /GB=AAF39960.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061388(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061388 NCBI Caenorhabditis elegans T02H6.8 (T02H6.8) mRNA, complete cds. 11/11 None
SNAP00000003363 ENSEMBL cdna:SNAP chromosome:CEL140:II:680838:683326:1 11/11 None
T02H6.8 ENSEMBL cdna:known chromosome:CEL140:II:680838:681522:1 gene:T02H6.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000003377 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:680837-681522(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02H6.8
Entrez Gene 188007 Entrez gene
SwissProt Q9N5F0 EMBL-EBI
WormBase CE21144 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39966 Hypothetical protein T02H6.7 [Caenorhabditis elegans] ref|NP_493790.1| T02H6.7 [Caenorhabditis elegans] 1.0E-102
blast AAF39961 Hypothetical protein T02H6.4 [Caenorhabditis elegans] ref|NP_493793.1| T02H6.4 [Caenorhabditis elegans] 2.0E-86
blast AAF39960 Hypothetical protein T02H6.8 [Caenorhabditis elegans] ref|NP_493789.1| T02H6.8 [Caenorhabditis elegans] 7.0E-81
blast AAF39960 Hypothetical protein T02H6.8 [Caenorhabditis elegans] ref|NP_493789.1| T02H6.8 [Caenorhabditis elegans] 8.0E-78
blast AAF39963 Hypothetical protein T02H6.3 [Caenorhabditis elegans] ref|NP_493794.1| T02H6.3 [Caenorhabditis elegans] 9.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 6.5E-25
Sequence
Target Sequence 
>C. ELEGANS:181472_AT
ctcattgcccatgtgtgtgctcatgttgagagccaccacagttgctctcctagaatttac
tggaaaattcttgcttatatcgacaatagaaaaggcctggaaactcgtgaaactcaattt
gagtactttatcgggtacaaggatcatctgaaatacgccgagagaaaggatatcacacat
gaaataatcgagagtcttgagcttgctagtccagatgtttttgatgatatcaggactgac
agcgccaaccgttactttgattttgaggatgcggagcggatgatcgaacgggattctagt
gcgagaactgatcatattggaactctgattgcccgtcctggcaagtttatggctagcaag
cagatgttcgtcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCATTGCCCATGTGTGTGCTCATG 285 229 31 Antisense
CTCATGTTGAGAGCCACCACAGTTG 209 229 50 Antisense
ACCACAGTTGCTCTCCTAGAATTTA 246 83 65 Antisense
AAGGCCTGGAAACTCGTGAAACTCA 63 159 122 Antisense
GAGAGTCTTGAGCTTGCTAGTCCAG 15 397 220 Antisense
GAGCTTGCTAGTCCAGATGTTTTTG 173 389 229 Antisense
ATATCAGGACTGACAGCGCCAACCG 708 17 257 Antisense
AGCGCCAACCGTTACTTTGATTTTG 666 39 271 Antisense
CATATTGGAACTCTGATTGCCCGTC 65 215 343 Antisense
GCCCGTCCTGGCAAGTTTATGGCTA 20 287 361 Antisense
GGCTAGCAAGCAGATGTTCGTCACT 471 537 381 Antisense
Sequence Source Affymetrix Proprietary Database