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[181471_at]

Description M03E7.1 /REP_DB=WormBase Gene ID /WP=CE07394 /TR=Q21500 /GB=AAB00727.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 17      6grp_total > 22      4grp_total > 38      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 197
(3)
P 		115.6
(-1.1)
P 		78.8
(-3)
M 		159.4
(1.1)
P 		118
B 113.5
(3)
P 		105.8
(2.1)
A 		110.2
(2.6)
A 		63.9
(-3)
M 		50
C 205.6
(3)
P 		143.7
(-1.3)
P 		118.9
(-3)
P 		131.1
(-2.2)
P 		87
avr 172
(3) 		121.7
(-1.3) 		102.6
(-3) 		118.1
(-1.7) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 159.2
(1.8)
P 		167.9
(2.3)
P 		178.8
(3)
P 		89.2
(-2.7)
A 		135.6
(0.3)
P 		84
(-3)
A 		95
B 167.4
(2.1)
P 		186.4
(3)
P 		148.3
(1.2)
P 		143.1
(0.9)
P 		59.8
(-3)
A 		68.8
(-2.6)
A 		127
C 115.3
(0.6)
P 		158.4
(2.8)
P 		117.4
(0.7)
P 		163.1
(3)
A 		54.4
(-2.4)
A 		43
(-3)
A 		120
avr 147.3
(1.7) 		170.9
(3) 		148.2
(1.7) 		131.8
(0.8) 		83.3
(-2) 		65.3
(-3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 71.7
(3)
P 		25.1
(-2.5)
P 		20.6
(-3)
M 		23.3
(-2.7)
P 		51
B 36.2
(3)
P 		26.1
(0.3)
A 		25.5
(0.2)
A 		13.6
(-3)
M 		23
C 68.1
(3)
P 		41.3
(-0.5)
P 		41.4
(-0.5)
P 		22.1
(-3)
P 		46
avr 58.7
(3) 		30.8
(-1.3) 		29.2
(-1.5) 		19.7
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 29.4
(-1.6)
P 		59.7
(3)
P 		38.9
(-0.2)
P 		22.6
(-2.7)
A 		40.9
(0.1)
P 		20.4
(-3)
A 		39
B 58.2
(2.4)
P 		62.1
(3)
P 		36
(-1.1)
P 		37.9
(-0.8)
P 		24.3
(-3)
A 		25.7
(-2.8)
A 		38
C 42.7
(2)
P 		48.3
(3)
P 		29.9
(-0.3)
P 		32.8
(0.3)
A 		17.6
(-2.4)
A 		14.4
(-3)
A 		34
avr 43.4
(0.8) 		56.7
(3) 		34.9
(-0.6) 		31.1
(-1.2) 		27.6
(-1.8) 		20.2
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181471_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11306
Sequence Type Exemplar sequence
Representative Public ID M03E7.1 NCBI
Target Description M03E7.1 /REP_DB=WormBase Gene ID /WP=CE07394 /TR=Q21500 /GB=AAB00727.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072084(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072084 NCBI Caenorhabditis elegans M03E7.1 (M03E7.1) mRNA, complete cds. 11/11 None
SNAP00000029718 ENSEMBL cdna:SNAP chromosome:CEL140:V:5626237:5627232:1 11/11 None
GENEFINDER00000029720 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5626237:5627232:1 11/11 None
M03E7.1 ENSEMBL cdna:known chromosome:CEL140:V:5626237:5627232:1 gene:M03E7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5626236-5627232(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M03E7.1
Entrez Gene 187422 Entrez gene
SwissProt Q21500 EMBL-EBI
WormBase CE07394 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00727 Hypothetical protein M03E7.1 [Caenorhabditis elegans] ref|NP_504485.1| M03E7.1 [Caenorhabditis elegans] 2.0E-65
blast CAE64599 Hypothetical protein CBG09354 [Caenorhabditis briggsae] 3.0E-55
blast AAP94885 MFP1-beta [Ascaris suum] 4.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.3E-31
Sequence
Target Sequence 
>C. ELEGANS:181471_AT
gactcgtgctcttatttttttttcagacaagcctgccttatcccaactccatctgttccg
actcatccctccgtttccatcaaaatctatcctccattcgccgaattcatcgactttggc
ggagcatcgcgtcatattttgacgaataatggcacgtgccgaattgtgttcaaagtcaaa
tgctcaaataacttggtgttcaaagtgtcaccagtttatgcttttttagatccgggagct
actgcggaacttcaggttctccgcagagaaggtcctccgaaacacgacaagctaataatt
tcgctcaaagaagccaaaaaaggtgacaaagatccacgggtaacattcaatgattcaacg
cataccacacacaagcacattctacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCGTGCTCTTATTTTTTTTTCA 166 375 37 Antisense
TTTTTCAGACAAGCCTGCCTTATCC 672 673 55 Antisense
TTTCCATCAAAATCTATCCTCCATT 401 669 110 Antisense
ATCCTCCATTCGCCGAATTCATCGA 530 37 125 Antisense
TCGACTTTGGCGGAGCATCGCGTCA 420 601 146 Antisense
ATGGCACGTGCCGAATTGTGTTCAA 583 49 185 Antisense
GTGTCACCAGTTTATGCTTTTTTAG 247 487 241 Antisense
GCTACTGCGGAACTTCAGGTTCTCC 598 301 274 Antisense
AGGTTCTCCGCAGAGAAGGTCCTCC 328 57 290 Antisense
AAGGTCCTCCGAAACACGACAAGCT 104 159 305 Antisense
ATACCACACACAAGCACATTCTACC 421 23 398 Antisense
Sequence Source Affymetrix Proprietary Database