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[181470_s_at]

Description D1009.3 /REP_DB=WormBase Gene ID /WP=CE27893 /TR=Q18914 /GB=AAA81695.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 62      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 93.5
(3)
P 		56.9
(0.4)
A 		48.3
(-0.2)
A 		7.6
(-3)
A 		86
B 102.6
(3)
P 		26.7
(-1.6)
A 		60.7
(0.4)
A 		4.1
(-3)
A 		99
C 130.4
(3)
P 		54.4
(-0.7)
A 		71.9
(0.1)
A 		8.4
(-3)
A 		122
avr 108.8
(3) 		46
(-0.7) 		60.3
(0.1) 		6.7
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 39.2
(-1.7)
A 		82.4
(0.7)
A 		124.3
(3)
A 		75.9
(0.4)
A 		14.6
(-3)
A 		15.9
(-2.9)
A 		110
B 65.9
(-0.7)
A 		104.1
(0.8)
A 		160.4
(3)
M 		10.8
(-2.8)
A 		53.9
(-1.2)
A 		6.9
(-3)
A 		154
C 104.1
(2)
A 		115.9
(2.9)
A 		117.4
(3)
A 		61.1
(-1.2)
A 		36.2
(-3)
A 		50.4
(-2)
A 		81
avr 69.7
(-0.5) 		100.8
(1.2) 		134
(3) 		49.3
(-1.6) 		34.9
(-2.4) 		24.4
(-3) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 34
(3)
P 		12.3
(-1)
A 		12.6
(-0.9)
A 		1.1
(-3)
A 		33
B 32.7
(3)
P 		6.6
(-1.9)
A 		14.1
(-0.5)
A 		0.9
(-3)
A 		32
C 43.2
(3)
P 		15.6
(-1)
A 		25.1
(0.4)
A 		1.4
(-3)
A 		42
avr 36.6
(3) 		11.5
(-1.2) 		17.3
(-0.3) 		1.1
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 7.2
(-2.2)
A 		29.3
(3)
A 		27.1
(2.5)
A 		19.3
(0.6)
A 		4.4
(-2.9)
A 		3.9
(-3)
A 		25
B 22.9
(0.3)
A 		34.7
(2.3)
A 		39
(3)
M 		2.9
(-3)
A 		21.9
(0.2)
A 		2.6
(-3)
A 		36
C 38.6
(3)
A 		35.4
(2.3)
A 		29.9
(1.1)
A 		12.3
(-2.9)
A 		11.7
(-3)
A 		16.9
(-1.8)
A 		27
avr 22.9
(0.6) 		33.1
(3) 		32
(2.7) 		11.5
(-2.1) 		12.7
(-1.8) 		7.8
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181470_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16872
Sequence Type Exemplar sequence
Representative Public ID D1009.3 NCBI
Target Description D1009.3 /REP_DB=WormBase Gene ID /WP=CE27893 /TR=Q18914 /GB=AAA81695.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029338(11), NM_001029337(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029338 NCBI Caenorhabditis elegans D1009.3b (D1009.3) mRNA, complete cds. 11/11 None
NM_001029337 NCBI Caenorhabditis elegans D1009.3a (D1009.3) mRNA, complete cds. 11/11 None
SNAP00000025059 ENSEMBL cdna:SNAP chromosome:CEL140:X:8908024:8910404:1 11/11 None
GENEFINDER00000025070 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8908024:8910404:1 11/11 None
D1009.3b ENSEMBL cdna:known chromosome:CEL140:X:8907987:8910765:1 gene:D1009.3 11/11 None
D1009.3a ENSEMBL cdna:known chromosome:CEL140:X:8908021:8910404:1 gene:D1009.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8908019-8910403(+) 100.0 100.0
Public Domain and Genome References
Ensembl D1009.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAQ65206 Hypothetical protein D1009.3b [Caenorhabditis elegans] ref|NP_001024509.1| D1009.3b [Caenorhabditis elegans] 0.0
blast AAA81695 Hypothetical protein D1009.3a [Caenorhabditis elegans] ref|NP_001024508.1| D1009.3a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002181 EMBL-EBI Fibrinogen, beta/gamma chain, C-terminal globular 1.3E-21
Pfam IPR002181 EMBL-EBI Fibrinogen, beta/gamma chain, C-terminal globular 1.3E-21
Pfam IPR002181 EMBL-EBI Fibrinogen, beta/gamma chain, C-terminal globular 1.3E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024509.1 1 61-83
NP_001024508.1 1 63-85
D1009.3b 1 61-83
D1009.3a 1 63-85
SNAP00000025059 1 60-82
GENEFINDER00000025070 1 60-82
Sequence
Target Sequence 
>C. ELEGANS:181470_S_AT
ttgacggcgatggcagtttccaccgaggaactatgaaaaagttcgttgaagggttcggaa
atctccaaggaagtcattggcttggtcttgaaaaacttcacaatttggccccaatcggag
cgactcctgctattcttcgcattgaaattcaaggtgaaacctgtgatttgacttgctcta
agagatttgcgaatacgtgggttggagaatggaaagtcaactttggaaagaaacaagacg
gttacaaaattcaaatcactgaagaaggagtaggtaatcttacttacaatggggtcgatc
cgttctttggtgcaaatggtagaaggttcagtacaaatgacaatgatcaagacgagaata
cgtttatgaattgtgctcagttcagaatggttggaccatggtggcacccaaaatcctgct
cagatgttgggctcaacggatatttccagacgacatctgaaaagtacgacgtcaaagata
gaaaccaaaacgcgaaacgctatttcgtatgggccttcgacaagcaaatttacaatgggt
atccgtacacaatccatgtcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGACGGCGATGGCAGTTTCCACCG 12 705 800 Antisense
AGGAAGTCATTGGCTTGGTCTTGAA 343 55 867 Antisense
AACTTCACAATTTGGCCCCAATCGG 175 137 893 Antisense
AATCGGAGCGACTCCTGCTATTCTT 476 169 912 Antisense
GAAACCTGTGATTTGACTTGCTCTA 131 359 955 Antisense
TACAATGGGGTCGATCCGTTCTTTG 246 641 1084 Antisense
AATCCTGCTCAGATGTTGGGCTCAA 20 169 1211 Antisense
GGCTCAACGGATATTTCCAGACGAC 178 539 1229 Antisense
GAAACGCTATTTCGTATGGGCCTTC 575 357 1293 Antisense
GTATGGGCCTTCGACAAGCAAATTT 175 453 1306 Antisense
GTATCCGTACACAATCCATGTCAGA 490 455 1338 Antisense
Sequence Source Affymetrix Proprietary Database