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[181469_s_at]

Description F11A10.4 /REP_DB=WormBase Gene ID /WP=CE17656 /TR=Q19338 /GB=CAA92830.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 20      4grp_highest_8_8 > 35      4grp_high_8_8 > 48      6grp_highest_nonorm > 74      6grp_total > 40      4grp_total > 63      6grp_highest_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 621.2
(3)
P 		476
(-1)
P 		532.7
(0.6)
P 		401.7
(-3)
P 		220
B 625.3
(3)
P 		445.4
(-3)
P 		530.4
(-0.2)
P 		476.1
(-2)
P 		180
C 577
(3)
P 		468.3
(-1.4)
P 		555.4
(2.1)
P 		430.2
(-3)
P 		147
avr 607.8
(3) 		463.2
(-2.1) 		539.5
(0.6) 		436
(-3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 674.7
(-3)
P 		793.8
(3)
P 		675.6
(-3)
P 		781.2
(2.4)
P 		713
(-1.1)
P 		749.8
(0.8)
P 		119
B 740.4
(0.8)
P 		793.1
(2)
P 		838.2
(3)
P 		837.1
(3)
P 		574.8
(-3)
P 		727.3
(0.5)
P 		263
C 820.6
(2.3)
P 		797.7
(1.8)
P 		850
(3)
P 		770.7
(1.1)
P 		643.4
(-1.9)
P 		598.2
(-3)
P 		252
avr 745.2
(1) 		794.9
(2.9) 		787.9
(2.7) 		796.3
(3) 		643.7
(-3) 		691.8
(-1.1) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 226.2
(3)
P 		103.3
(-1.4)
P 		139.3
(-0.1)
P 		58.8
(-3)
P 		167
B 199.4
(3)
P 		110
(-2.5)
P 		122.9
(-1.7)
P 		101.5
(-3)
P 		98
C 191
(2.9)
P 		134.6
(0.1)
P 		193.6
(3)
P 		72.5
(-3)
P 		121
avr 205.5
(3) 		116
(-1.2) 		151.9
(0.5) 		77.6
(-3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 124.4
(-3)
P 		282.3
(3)
P 		147.1
(-2.1)
P 		198.1
(-0.2)
P 		215.1
(0.4)
P 		182.5
(-0.8)
P 		158
B 257.6
(1.8)
P 		264
(2.4)
P 		203.5
(-3)
P 		221.7
(-1.4)
P 		233.5
(-0.3)
P 		271.2
(3)
P 		68
C 304.2
(3)
P 		243.4
(0.6)
P 		216.3
(-0.5)
P 		155
(-3)
P 		208.2
(-0.9)
P 		200.3
(-1.2)
P 		149
avr 228.7
(0.2) 		263.2
(3) 		189
(-3) 		191.6
(-2.8) 		218.9
(-0.6) 		218
(-0.7) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181469_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9442
Sequence Type Exemplar sequence
Representative Public ID F11A10.4 NCBI
Target Description F11A10.4 /REP_DB=WormBase Gene ID /WP=CE17656 /TR=Q19338 /GB=CAA92830.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069894(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069894 NCBI Caenorhabditis elegans F11A10.4 (F11A10.4) mRNA, complete cds. 11/11 None
SNAP00000023280 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12100067:12105389:1 11/11 None
GENEFINDER00000023289 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12100082:12105389:1 11/11 None
F11A10.4 ENSEMBL cdna:known chromosome:CEL140:IV:12096748:12105731:1 gene:F11A10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12096755-12105395(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11A10.4
Entrez Gene 178153 Entrez gene
SwissProt Q19338 EMBL-EBI
WormBase CE17656 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246760_AT expressed protein at
CANINE:1604755_AT similar to CG31756-PA cfa
CANINE_2:CFA.19566.1.S1_AT similar to CG31756-PA cfa
CANINE_2:CFAAFFX.1442.1.S1_S_AT similar to CG31756-PA cfa
DROSOPHILA_2:1630764_AT dm
DROSGENOME1:152544_AT dm
DROSGENOME1:151420_S_AT dm
CHICKEN:GGA.12740.1.S1_S_AT similar to SF21 protein gga
CHICKEN:GGAAFFX.23039.3.S1_S_AT similar to SF21 protein gga
HU35KSUBA:RC_AA284865_AT KIAA1040 protein hs
HU35KSUBD:RC_AA504489_AT KIAA1040 protein hs
U133_X3P:HS.9846.0.S2_3P_AT KIAA1040 protein hs
U133_X3P:HS.9846.0.S1_3P_A_AT KIAA1040 protein hs
HG-U133A_2:212754_S_AT KIAA1040 protein hs
HG-U133_PLUS_2:212754_S_AT KIAA1040 protein hs
HG-U133A:212754_S_AT KIAA1040 protein hs
HG-U133A_2:212755_AT KIAA1040 protein hs
HG-U133_PLUS_2:212755_AT KIAA1040 protein hs
HG-U133A:212755_AT KIAA1040 protein hs
HG-U95AV2:32693_AT KIAA1040 protein hs
U133_X3P:HS2.406370.1.S1_3P_AT KIAA1040 protein hs
HG-U133_PLUS_2:1570298_AT KIAA1040 protein hs
HG-U133_PLUS_2:242225_AT KIAA1040 protein hs
HG-U133B:242225_AT KIAA1040 protein hs
HG-U95D:69747_AT KIAA1040 protein hs
HG-U95D:83801_AT KIAA1040 protein hs
HG-U95D:87341_AT KIAA1040 protein hs
HU35KSUBA:RC_D20297_AT KIAA1040 protein hs
U133_X3P:HS.225161.0.A1_3P_AT KIAA1040 protein hs
MG-U74BV2:112846_AT RIKEN cDNA 2610528O22 gene mm
MG-U74BV2:164202_AT RIKEN cDNA 2610528O22 gene mm
MOE430B:1428817_AT RIKEN cDNA 2610528O22 gene mm
MOUSE430_2:1428817_AT RIKEN cDNA 2610528O22 gene mm
MG-U74CV2:129211_AT RIKEN cDNA 2610528O22 gene (2610528O22Rik), mRNA mm
MOE430B:1428818_AT RIKEN cDNA 2610528O22 gene (2610528O22Rik), mRNA mm
MOUSE430_2:1428818_AT RIKEN cDNA 2610528O22 gene (2610528O22Rik), mRNA mm
MOE430B:1440027_AT RIKEN cDNA 2610528O22 gene (2610528O22Rik), mRNA mm
MOUSE430_2:1440027_AT RIKEN cDNA 2610528O22 gene (2610528O22Rik), mRNA mm
MU19KSUBB:TC33373_AT RIKEN cDNA 2610528O22 gene (2610528O22Rik), mRNA mm
RAE230B:1394391_AT similar to SF21 (predicted) rn
RAT230_2:1394391_AT similar to SF21 (predicted) rn
YEAST_2:1778507_AT Peripheral membrane protein with a role in endocytosis and vacuole integrity, interacts with Arl1p and localizes to the endosome; member of the Sec7p family of proteins Sc
Protein Similarities
Method ID Description E-Value
blast CAA92597 Hypothetical protein F11A10.4 [Caenorhabditis elegans] emb|CAA92830.1| Hypothetical protein F11A10.4 [Caenorhabditis elegans] ref|NP_502295.1| F11A10.4 [Caenorhabditis elegans] 0.0
blast CAE62181 Hypothetical protein CBG06228 [Caenorhabditis briggsae] 0.0
blast XP_393240 PREDICTED: similar to CG31756-PA [Apis mellifera] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181469_S_AT
aaatgctcgcatatgcatcccgtttaccacaagaagatgttcaacggctgattgcactac
ttcatcgtggctccatttcacaaatcgattctacagatgttcttgactcgcatactcaac
gaaatgagctggcaaaggcctgttttgatgctctattgatgtcatctgatggagcacata
caaatactgaagaagacgaaggaagaggaattcttggaaatgttgctgtgacaagtcttt
tacaaagatgcacacaggttatgtctgatttctgcaaagattggtctgctgctggagatc
ttcgtttacctagatccagaatactagaaatcatatctgcacttcaagctgttgactcac
taattgcacgacttgcaagagatccaaaaatgactgaactctactcgcacttagtttcac
tatttccatcggttgttgatgtgatgccttgctgccatgctgatcctcaactggaacatc
aactgatcaagacaatcaaatcatatcaaacactcttccttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGCTCGCATATGCATCCCGTTT 698 119 4400 Antisense
CAACGGCTGATTGCACTACTTCATC 458 187 4441 Antisense
CTTCATCGTGGCTCCATTTCACAAA 362 221 4459 Antisense
AAAGGCCTGTTTTGATGCTCTATTG 608 119 4533 Antisense
TGCTGCTGGAGATCTTCGTTTACCT 433 581 4686 Antisense
GCTGTTGACTCACTAATTGCACGAC 60 297 4747 Antisense
AAATGACTGAACTCTACTCGCACTT 12 121 4787 Antisense
TAGTTTCACTATTTCCATCGGTTGT 179 651 4811 Antisense
TTGTTGATGTGATGCCTTGCTGCCA 245 707 4832 Antisense
TGCCATGCTGATCCTCAACTGGAAC 640 585 4852 Antisense
AAATCATATCAAACACTCTTCCTTC 486 117 4897 Antisense
Sequence Source Affymetrix Proprietary Database