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[181468_s_at]

Description ZK813.3 /REP_DB=WormBase Gene ID /WP=CE05112 /TR=Q23604 /GB=AAB52655.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 59.1
(-2.7)
A 		75.2
(-2.1)
A 		51.8
(-3)
A 		211.7
(3)
A 		160
B 87.3
(0.5)
A 		60.8
(-3)
A 		105.8
(3)
A 		72.3
(-1.5)
A 		45
C 54.6
(-2.4)
A 		41.3
(-3)
A 		121.8
(0.8)
A 		169.7
(3)
A 		128
avr 67
(-2.5) 		59.1
(-3) 		93.1
(-0.8) 		151.2
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1674
1 2 3 4 5 6 range
A 61.7
(-2.8)
A 		58.9
(-2.8)
A 		19.9
(-3)
A 		20.3
(-3)
A 		1288.5
(3)
P 		1073.4
(2)
P 		1269
B 64.2
(-2.8)
A 		21.9
(-3)
A 		71.6
(-2.8)
A 		29.6
(-3)
A 		1390.8
(3)
P 		902.9
(0.9)
P 		1369
C 114.5
(-2.6)
A 		19.2
(-3)
A 		76.7
(-2.8)
A 		7.8
(-3)
A 		1681.9
(3)
P 		942.1
(0.3)
P 		1674
avr 80.1
(-2.7) 		33.3
(-2.9) 		56.1
(-2.8) 		19.2
(-3) 		1453.7
(3) 		972.8
(1) 		1435
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 21.5
(-0.3)
A 		16.3
(-2)
A 		13.5
(-3)
A 		31
(3)
A 		18
B 27.8
(3)
A 		15
(-3)
A 		24.5
(1.5)
A 		15.4
(-2.8)
A 		13
C 18.1
(-1.8)
A 		11.9
(-3)
A 		42.4
(3)
A 		28.6
(0.3)
A 		31
avr 22.5
(0.9) 		14.4
(-3) 		26.8
(3) 		25
(2.1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 563
1 2 3 4 5 6 range
A 11.4
(-2.9)
A 		21
(-2.7)
A 		4.3
(-3)
A 		5.2
(-3)
A 		388.8
(3)
P 		261.3
(1)
P 		385
B 22.3
(-2.8)
A 		7.3
(-3)
A 		17.4
(-2.9)
A 		7.9
(-3)
A 		565
(3)
P 		336.7
(0.5)
P 		558
C 42.5
(-2.5)
A 		5.9
(-3)
A 		19.5
(-2.8)
A 		1.6
(-3)
A 		544.2
(3)
P 		315.4
(0.5)
P 		543
avr 25.4
(-2.8) 		11.4
(-2.9) 		13.7
(-2.9) 		4.9
(-3) 		499.3
(3) 		304.5
(0.6) 		494
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181468_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18533
Sequence Type Exemplar sequence
Representative Public ID ZK813.3 NCBI
Target Description ZK813.3 /REP_DB=WormBase Gene ID /WP=CE05112 /TR=Q23604 /GB=AAB52655.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076192(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076192 NCBI Caenorhabditis elegans ZK813.3 (ZK813.3) mRNA, complete cds. 11/11 None
SNAP00000039692 ENSEMBL cdna:SNAP chromosome:CEL140:X:3441840:3442358:1 11/11 None
GENEFINDER00000039700 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3441840:3445184:1 11/11 None
ZK813.3 ENSEMBL cdna:known chromosome:CEL140:X:3441826:3442583:1 gene:ZK813.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3441840-3442584(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK813.3
Entrez Gene 180634 Entrez gene
SwissProt Q23604 EMBL-EBI
WormBase CE29944 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52655 Hypothetical protein ZK813.3 [Caenorhabditis elegans] ref|NP_508593.2| ZK813.3 [Caenorhabditis elegans] 2.0E-71
blast AAB52655 Hypothetical protein ZK813.3 [Caenorhabditis elegans] ref|NP_508593.2| ZK813.3 [Caenorhabditis elegans] 1.0E-50
blast AAB52655 Hypothetical protein ZK813.3 [Caenorhabditis elegans] ref|NP_508593.2| ZK813.3 [Caenorhabditis elegans] 7.0E-50
Sequence
Target Sequence 
>C. ELEGANS:181468_S_AT
cgttgtggctgctacctatgatggcaatgcggctcaagactctaacaatgcttatggagt
gaacaccgctgctcagagttctaataatgctccacaaacttacggatcccgtcttcctca
cccaggatacaatcgtgtttatgacgagtttgatgttccaagaaaacacagaagacgccg
ccaccgcgaagacgccatcaccgaaattcaagatctaactctcgctcctccagctccagt
tctgattccgattcggattcggactccagaagccgtagtcgcagcagcagcagtgaaagt
gatgagtttgatcgtggatacattgttctccgaacaccatacagagccccagctcaaaat
tcctatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTGTGGCTGCTACCTATGATGGC 376 247 45 Antisense
GATGGCAATGCGGCTCAAGACTCTA 380 405 64 Antisense
GAACACCGCTGCTCAGAGTTCTAAT 22 353 105 Antisense
ATGCTCCACAAACTTACGGATCCCG 27 43 131 Antisense
AAGAAAACACAGAAGACGCCGCCAC 704 151 204 Antisense
GAAGACGCCATCACCGAAATTCAAG 482 337 232 Antisense
AATTCAAGATCTAACTCTCGCTCCT 176 177 249 Antisense
GCTCCAGTTCTGATTCCGATTCGGA 421 297 277 Antisense
GATTCGGATTCGGACTCCAGAAGCC 20 433 294 Antisense
TGTTCTCCGAACACCATACAGAGCC 621 561 368 Antisense
GAGCCCCAGCTCAAAATTCCTATGG 598 385 388 Antisense
Sequence Source Affymetrix Proprietary Database