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[181467_at]

Description C17B7.4 /REP_DB=WormBase Gene ID /WP=CE16852 /TR=O45156 /GB=AAC04398.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 57      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 37.6
(-1.6)
A 		72.3
(3)
A 		33.5
(-2.2)
A 		27.1
(-3)
A 		45
B 4.8
(-3)
A 		29.6
(-1.5)
A 		104.6
(3)
A 		34.9
(-1.2)
A 		100
C 38.5
(-0.5)
A 		84.5
(3)
A 		73.8
(2.2)
A 		5.1
(-3)
A 		79
avr 27
(-2.4) 		62.1
(1.9) 		70.6
(3) 		22.4
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 47.6
(-0.9)
A 		23.4
(-2.2)
A 		61.5
(-0.2)
A 		65.4
(-0)
A 		122.5
(3)
A 		8.7
(-3)
A 		114
B 29.6
(-1.7)
A 		71
(1.2)
A 		10.9
(-3)
A 		96.4
(3)
A 		66.5
(0.9)
A 		48.1
(-0.4)
A 		86
C 69.3
(-0.8)
A 		19.8
(-3)
A 		45.9
(-1.8)
A 		153
(3)
A 		77.7
(-0.4)
P 		56.7
(-1.3)
A 		133
avr 48.8
(-2) 		38.1
(-3) 		39.4
(-2.9) 		104.9
(3) 		88.9
(1.6) 		37.8
(-3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 13.7
(2)
A 		15.7
(3)
A 		8.8
(-0.5)
A 		4
(-3)
A 		12
B 1.5
(-3)
A 		7.3
(-1.5)
A 		24.2
(3)
A 		7.4
(-1.4)
A 		23
C 12.7
(-0.1)
A 		24.3
(2.7)
A 		25.7
(3)
A 		0.9
(-3)
A 		25
avr 9.3
(-1) 		15.8
(1.5) 		19.6
(3) 		4.1
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 8.8
(-1.8)
A 		8.3
(-1.9)
A 		13.4
(-1.1)
A 		16.6
(-0.5)
A 		37
(3)
A 		2.1
(-3)
A 		35
B 10.3
(-1.1)
A 		23.6
(2.2)
A 		2.6
(-3)
A 		25.5
(2.6)
A 		27
(3)
A 		17.9
(0.8)
A 		24
C 25.7
(1.8)
A 		6
(-3)
A 		11.7
(-1.6)
A 		30.8
(3)
A 		25.2
(1.6)
P 		19
(0.1)
A 		25
avr 14.9
(-1.3) 		12.6
(-2) 		9.2
(-3) 		24.3
(1.4) 		29.7
(3) 		13
(-1.9) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181467_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14931
Sequence Type Exemplar sequence
Representative Public ID C17B7.4 NCBI
Target Description C17B7.4 /REP_DB=WormBase Gene ID /WP=CE16852 /TR=O45156 /GB=AAC04398.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071525(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071525 NCBI Caenorhabditis elegans C17B7.4 (C17B7.4) mRNA, complete cds. 11/11 A 
SNAP00000020308 ENSEMBL cdna:SNAP chromosome:CEL140:V:3339174:3339857:1 11/11 None
C17B7.4 ENSEMBL cdna:known chromosome:CEL140:V:3339174:3339857:1 gene:C17B7.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3339173-3339857(+) 100.0 100.0
chrV:3270379-3271067(+) 94.56 94.56
Public Domain and Genome References
Gene Title
Ensembl C17B7.4
Entrez Gene 182706 Entrez gene
SwissProt O45156 EMBL-EBI
WormBase CE16852 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04398 Hypothetical protein C17B7.4 [Caenorhabditis elegans] ref|NP_503926.1| C17B7.4 [Caenorhabditis elegans] 1.0E-114
blast NP_503901 T28A11.5 [Caenorhabditis elegans] gb|AAC48116.2| Hypothetical protein T28A11.5 [Caenorhabditis elegans] 2.0E-98
blast NP_503895 T28A11.16 [Caenorhabditis elegans] gb|AAC48125.1| Hypothetical protein T28A11.16 [Caenorhabditis elegans] 5.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 3.5E-81
Sequence
Target Sequence 
>C. ELEGANS:181467_AT
gaggtgttacaccattcttggagcattcctccttgcaatcgtttatggatccagcccgaa
tagtgaaacaagtattatcgagtcaggaactggaacaaattgcactgaactcacatttaa
aaaattcttcgtgtgcctttatcgattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGTGTTACACCATTCTTGGAGCA 693 401 15 Antisense
TACACCATTCTTGGAGCATTCCTCC 256 643 22 Antisense
CATTCTTGGAGCATTCCTCCTTGCA 244 217 27 Antisense
TCTTGGAGCATTCCTCCTTGCAATC 252 619 30 Antisense
GCAATCGTTTATGGATCCAGCCCGA 253 321 49 Antisense
TTATGGATCCAGCCCGAATAGTGAA 168 681 57 Antisense
GATCCAGCCCGAATAGTGAAACAAG 277 415 62 Antisense
GGAACAAATTGCACTGAACTCACAT 114 529 106 Antisense
AATTGCACTGAACTCACATTTAAAA 284 179 112 Antisense
AAATTCTTCGTGTGCCTTTATCGAT 28 115 136 Antisense
ATTCTTCGTGTGCCTTTATCGATTC 300 9 138 Antisense
Sequence Source Affymetrix Proprietary Database