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[181466_at]

Description K04A8.3 /REP_DB=WormBase Gene ID /WP=CE11704 /TR=Q94257 /GB=AAC48049.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 70      6grp_total > 39      4grp_total > 06      6grp_high1_sub > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 63.9
(0.7)
P 		20.4
(-3)
A 		45.9
(-0.8)
A 		91.3
(3)
P 		71
B 55.9
(1)
P 		25.9
(-3)
A 		28.5
(-2.6)
A 		70.4
(3)
P 		45
C 64.2
(1)
P 		7
(-3)
A 		14.4
(-2.5)
A 		92.9
(3)
P 		86
avr 61.3
(0.9) 		17.8
(-3) 		29.6
(-1.9) 		84.9
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 67.3
(3)
P 		38.1
(-0.5)
A 		35
(-0.9)
P 		17.7
(-3)
A 		62.1
(2.4)
P 		39.3
(-0.4)
A 		50
B 54
(3)
P 		33.8
(0.1)
A 		32.2
(-0.1)
A 		12.1
(-3)
A 		46.9
(2)
P 		45.9
(1.8)
P 		42
C 38.1
(-1.2)
P 		57.3
(0.6)
P 		18.9
(-3)
A 		83.4
(3)
P 		34.7
(-1.5)
P 		37.3
(-1.3)
P 		65
avr 53.1
(3) 		43.1
(0.5) 		28.7
(-3) 		37.7
(-0.8) 		47.9
(1.7) 		40.8
(-0) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 23.3
(3)
P 		4.4
(-3)
A 		12
(-0.6)
A 		13.4
(-0.1)
P 		19
B 17.8
(3)
P 		6.4
(-3)
A 		6.6
(-2.9)
A 		15
(1.5)
P 		11
C 21.3
(3)
P 		2
(-3)
A 		5
(-2.1)
A 		15.7
(1.3)
P 		19
avr 20.8
(3) 		4.3
(-3) 		7.9
(-1.7) 		14.7
(0.8) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 12.4
(0.3)
P 		13.6
(0.8)
A 		7.6
(-1.7)
P 		4.5
(-3)
A 		18.7
(3)
P 		9.6
(-0.8)
A 		14
B 18.8
(2.9)
P 		11.3
(0.1)
A 		7.8
(-1.3)
A 		3.2
(-3)
A 		19.1
(3)
P 		17.1
(2.2)
P 		16
C 14.1
(1.4)
P 		17.5
(3)
P 		4.8
(-3)
A 		16.8
(2.7)
P 		11.2
(0)
P 		12.5
(0.6)
P 		13
avr 15.1
(2.3) 		14.1
(1.6) 		6.7
(-3) 		8.2
(-2.1) 		16.3
(3) 		13.1
(1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181466_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11666
Sequence Type Exemplar sequence
Representative Public ID K04A8.3 NCBI
Target Description K04A8.3 /REP_DB=WormBase Gene ID /WP=CE11704 /TR=Q94257 /GB=AAC48049.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072266(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072266 NCBI Caenorhabditis elegans K04A8.3 (K04A8.3) mRNA, complete cds. 11/11 None
GENEFINDER00000001695 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6562130:6562790:1 11/11 None
K04A8.3 ENSEMBL cdna:known chromosome:CEL140:V:6562130:6562790:1 gene:K04A8.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001686 2/11 Cross Hyb Matching Probes None
SNAP00000001687 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6562129-6562790(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04A8.3
Entrez Gene 186971 Entrez gene
SwissProt Q94257 EMBL-EBI
WormBase CE11704 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48049 Hypothetical protein K04A8.3 [Caenorhabditis elegans] ref|NP_504667.1| K04A8.3 [Caenorhabditis elegans] 1.0E-62
blast CAE71907 Hypothetical protein CBG18969 [Caenorhabditis briggsae] 1.0E-43
Sequence
Target Sequence 
>C. ELEGANS:181466_AT
ggcccagaagatcagcatcaatcgtggattgggtctcggcatggcacaacttggggcgtt
tgcacgaatgggaatgatgatcaatgtaagcgccatgggtcctcaagacggtcatgcaaa
cgggggcgtgggagaaggtgggattgagatgagcaggaagtcaacgtggcgaagcgaaaa
tgatgaaattaaaacaaggaagagcacagcttttgaaccagatttagactttgatatgat
agatttcagacagccatcaggttcatctcaatacctttatggattcggttttgacaacaa
tgcattcggcttggccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCCAGAAGATCAGCATCAATCGT 273 541 15 Antisense
ACAACTTGGGGCGTTTGCACGAATG 626 111 60 Antisense
TCAATGTAAGCGCCATGGGTCCTCA 464 631 95 Antisense
ATGGGTCCTCAAGACGGTCATGCAA 455 49 109 Antisense
ACGGTCATGCAAACGGGGGCGTGGG 648 93 122 Antisense
GGGGCGTGGGAGAAGGTGGGATTGA 286 497 137 Antisense
GAGCAGGAAGTCAACGTGGCGAAGC 130 389 165 Antisense
AAGAGCACAGCTTTTGAACCAGATT 224 155 214 Antisense
TTCAGACAGCCATCAGGTTCATCTC 48 687 259 Antisense
GGTTCATCTCAATACCTTTATGGAT 461 505 274 Antisense
ACAACAATGCATTCGGCTTGGCCGA 375 111 308 Antisense
Sequence Source Affymetrix Proprietary Database