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[181465_at]

Description C44E4.2 /REP_DB=WormBase Gene ID /WP=CE08716 /TR=O01807 /GB=AAB54170.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 21      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 73.3
(1.4)
A 		33
(-1.2)
A 		4.4
(-3)
A 		97.7
(3)
A 		93
B 85.2
(3)
A 		41.8
(-1.7)
A 		29.2
(-3)
A 		73.6
(1.8)
A 		56
C 83.4
(0.3)
A 		38.5
(-1.9)
A 		14.7
(-3)
A 		140.9
(3)
A 		126
avr 80.6
(1.4) 		37.8
(-1.5) 		16.1
(-3) 		104.1
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 76.4
(3)
A 		41.9
(-1.7)
A 		34.5
(-2.7)
A 		38
(-2.2)
A 		32.1
(-3)
A 		51.5
(-0.4)
A 		44
B 62.7
(3)
P 		48.6
(1.1)
P 		32.9
(-1.1)
A 		44.2
(0.4)
A 		19.2
(-3)
A 		48.4
(1)
A 		44
C 33.3
(1.1)
A 		39.7
(2.4)
A 		23.8
(-0.8)
A 		42.4
(3)
A 		13
(-3)
A 		29.7
(0.4)
A 		29
avr 57.5
(3) 		43.4
(0.7) 		30.4
(-1.5) 		41.5
(0.3) 		21.4
(-3) 		43.2
(0.6) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 26.7
(3)
A 		7.2
(-1.6)
A 		1.1
(-3)
A 		14.3
(0.1)
A 		26
B 27.2
(3)
A 		10.3
(-2)
A 		6.8
(-3)
A 		15.7
(-0.4)
A 		20
C 27.6
(3)
A 		11.1
(-1.4)
A 		5.1
(-3)
A 		23.8
(2)
A 		23
avr 27.2
(3) 		9.5
(-1.6) 		4.3
(-3) 		17.9
(0.6) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 14.1
(2.4)
A 		14.9
(3)
A 		7.5
(-3)
A 		9.6
(-1.3)
A 		9.7
(-1.2)
A 		12.5
(1.1)
A 		7
B 21.8
(3)
P 		16.2
(0.6)
P 		8
(-2.9)
A 		11.7
(-1.3)
A 		7.8
(-3)
A 		18.1
(1.4)
A 		14
C 12.3
(3)
A 		12.1
(2.9)
A 		6.1
(-1.6)
A 		8.5
(0.2)
A 		4.2
(-3)
A 		9.9
(1.2)
A 		8
avr 16.1
(3) 		14.4
(1.9) 		7.2
(-3) 		9.9
(-1.2) 		7.2
(-3) 		13.5
(1.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181465_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1075
Sequence Type Exemplar sequence
Representative Public ID C44E4.2 NCBI
Target Description C44E4.2 /REP_DB=WormBase Gene ID /WP=CE08716 /TR=O01807 /GB=AAB54170.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059009(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059009 NCBI Caenorhabditis elegans C44E4.2 (C44E4.2) mRNA, complete cds. 11/11 None
SNAP00000019658 ENSEMBL cdna:SNAP chromosome:CEL140:I:4610269:4633348:-1 10/11 None
GENEFINDER00000019663 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4610269:4633348:-1 9/11 None
C44E4.2 ENSEMBL cdna:known chromosome:CEL140:I:4631358:4633348:-1 gene:C44E4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4631357-4633348(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44E4.2
Entrez Gene 183459 Entrez gene
SwissProt O01807 EMBL-EBI
WormBase CE08716 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54170 Hypothetical protein C44E4.2 [Caenorhabditis elegans] ref|NP_491410.1| C44E4.2 [Caenorhabditis elegans] 0.0
blast D87757 protein C44E4.1a [imported] - Caenorhabditis elegans 0.0
blast AAM15563 Hypothetical protein C44E4.1c [Caenorhabditis elegans] ref|NP_740838.1| C44E4.1c [Caenorhabditis elegans] 0.0
blast AAD47119 Hypothetical protein C44E4.1a [Caenorhabditis elegans] ref|NP_491407.1| C44E4.1a [Caenorhabditis elegans] 0.0
blast CAE74490 Hypothetical protein CBG22241 [Caenorhabditis briggsae] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR003126 EMBL-EBI Zn-finger (putative), N-recognin 6.8E-14
Pfam IPR004190 EMBL-EBI DNA polymerase processivity factor 1.9E-38
Pfam IPR003126 EMBL-EBI Zn-finger (putative), N-recognin 6.8E-14
Pfam IPR004190 EMBL-EBI DNA polymerase processivity factor 1.9E-38
Sequence
Target Sequence 
>C. ELEGANS:181465_AT
agctatttggaacactgatcttgaagaaacagcgcgtaaaatgatgaatcaggagtggga
ttctgtgaaaatcgattcaagcccagactcggcgaaacaagcggctggtcttattgagaa
gagcatttttgatttattctccgagatgaaggatcatgaaacattcgcgaacgaattgta
ctatgcagcgttggcgagaattttgaaacgcctccaagaaaataaaaaaccggcaattca
agattcagaagacatttcattttacgaatcttcacttcacatctacgacgagctaatcaa
aaagttatggccacatttatcgaaaaaagatccaaatgtcaaaaagaatactctcatcat
ttttgagaaattaattagtctatcaccaactgatgttcttgttcaaagaatcactgaaaa
atttattgactcttgtgaatggctgaaaatcagtggagaagagatttgtacatcgatgga
accgagactctggaaaattgttggatctctggtttcaaggattttggatttaaaaaagac
gattccatatgaaattgctattgttttggcttctctgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTATTTGGAACACTGATCTTGAA 694 77 441 Antisense
TCGATTCAAGCCCAGACTCGGCGAA 592 603 512 Antisense
GACTCGGCGAAACAAGCGGCTGGTC 49 365 526 Antisense
GAATTGTACTATGCAGCGTTGGCGA 351 323 613 Antisense
GAGAATTTTGAAACGCCTCCAAGAA 343 391 636 Antisense
TTCATTTTACGAATCTTCACTTCAC 432 689 696 Antisense
TTCACTTCACATCTACGACGAGCTA 154 687 711 Antisense
GTCTATCACCAACTGATGTTCTTGT 613 469 818 Antisense
ACATCGATGGAACCGAGACTCTGGA 131 107 910 Antisense
AATTGTTGGATCTCTGGTTTCAAGG 290 177 936 Antisense
TTGCTATTGTTTTGGCTTCTCTGCC 595 703 995 Antisense
Sequence Source Affymetrix Proprietary Database