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[181462_at]

Description W03D8.8 /REP_DB=WormBase Gene ID /WP=CE18328 /TR=O45003 /GB=AAK21494.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 38      4grp_highest_8_8 > 09      4grp_high_8_8 > 61      6grp_total > 37      4grp_total > 58      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 438
1 2 3 4 range
A 281.1
(0.3)
P 		396.2
(3)
P 		348
(1.9)
P 		144.4
(-3)
P 		252
B 278
(-0.7)
P 		377.5
(0.7)
P 		546.6
(3)
P 		112.1
(-3)
P 		435
C 242
(-0.6)
P 		435
(3)
P 		436.1
(3)
P 		108.7
(-3)
P 		327
avr 267
(-0.3) 		402.9
(2.2) 		443.6
(3) 		121.7
(-3) 		322

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 195.8
(3)
P 		146.1
(0.4)
P 		84.2
(-2.8)
P 		100.8
(-1.9)
P 		80.2
(-3)
P 		124.5
(-0.7)
P 		116
B 146.9
(3)
P 		107.3
(-0.5)
P 		78.8
(-3)
P 		95.2
(-1.6)
P 		87
(-2.3)
P 		115.8
(0.3)
P 		68
C 161.6
(3)
P 		114.3
(0.6)
P 		41
(-3)
A 		62.1
(-2)
M 		95.1
(-0.3)
P 		128.4
(1.3)
P 		121
avr 168.1
(3) 		122.6
(0.3) 		68
(-3) 		86
(-1.9) 		87.4
(-1.8) 		122.9
(0.3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 102.4
(3)
P 		86
(1.8)
P 		91
(2.2)
P 		21.1
(-3)
P 		81
B 88.7
(0.8)
P 		93.2
(1)
P 		126.7
(3)
P 		23.9
(-3)
P 		103
C 80.1
(-0.2)
P 		125.1
(1.8)
P 		152
(3)
P 		18.3
(-3)
P 		134
avr 90.4
(1.1) 		101.4
(1.7) 		123.2
(3) 		21.1
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 36.1
(0.2)
P 		51.9
(3)
P 		18.3
(-3)
P 		25.6
(-1.7)
P 		24.2
(-1.9)
P 		30.3
(-0.9)
P 		34
B 51.1
(3)
P 		35.7
(0.1)
P 		19.1
(-3)
P 		25.2
(-1.9)
P 		35.4
(0.1)
P 		43.2
(1.5)
P 		32
C 59.9
(3)
P 		34.9
(-0)
P 		10.4
(-3)
A 		12.5
(-2.7)
M 		30.8
(-0.5)
P 		43
(1)
P 		50
avr 49
(3) 		40.8
(1.5) 		15.9
(-3) 		21.1
(-2.1) 		30.1
(-0.4) 		38.8
(1.2) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181462_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.259
Sequence Type Exemplar sequence
Representative Public ID W03D8.8 NCBI
Target Description W03D8.8 /REP_DB=WormBase Gene ID /WP=CE18328 /TR=O45003 /GB=AAK21494.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058646
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000016965 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2791690:2797262:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058646 8/11 Cross Hyb Matching Probes None
SNAP00000016956 8/11 Cross Hyb Matching Probes None
W03D8.8 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2791689-2794896(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491047 W03D8.8 [Caenorhabditis elegans] gb|AAK21494.2| Hypothetical protein W03D8.8 [Caenorhabditis elegans] 0.0
blast CAE60489 Hypothetical protein CBG04103 [Caenorhabditis briggsae] 0.0
blast CAE67026 Hypothetical protein CBG12427 [Caenorhabditis briggsae] 1.0E-157
Protein Domains
Database ID Description E-Value
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 4.0E-32
Pfam IPR006862 EMBL-EBI Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase 3.7E-102
Sequence
Target Sequence 
>C. ELEGANS:181462_AT
tctcccatggccaagtcactttggagcactgtcaattcattaatggagtcatgtgttccc
atagaaacttccagattatgacagaaaaattgacaccagaaactgaaattccatgggaac
gaatccccagtgatgtcaaaattcgtgtaattgtaagtgttcgagctgacgttcagcgga
aattttgtgagcttcagggatccgtggatgatttgtgtcaaccatcggtgcatgcaacgt
attacagacagagaagactcaaggagaccgggcatgatgtggagacagtcaaagttccat
cagacgttttttttttcaaccgaaattccgaaaataatccgattaactcagaggttgaac
tagtgaatggaggacacattatggagccaccatacttcccacatcacgaactcgtctacg
caaaataccagggattctattgtggatatggtggagaagtggttctacacgcaaaatcac
aggagaagacatggtccaatactatcaaattcttccaaaaagctcttggaaatacaaaga
aaattcaggattgggatcgactgacggttgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCCATGGCCAAGTCACTTTGGA 36 611 818 Antisense
GTCACTTTGGAGCACTGTCAATTCA 158 465 832 Antisense
GGAGTCATGTGTTCCCATAGAAACT 454 517 862 Antisense
GGAACGAATCCCCAGTGATGTCAAA 194 531 933 Antisense
GTAAGTGTTCGAGCTGACGTTCAGC 682 461 970 Antisense
GTGAGCTTCAGGGATCCGTGGATGA 428 483 1004 Antisense
GTGTCAACCATCGGTGCATGCAACG 291 487 1032 Antisense
GTCAAAGTTCCATCAGACGTTTTTT 27 465 1105 Antisense
ATTATGGAGCCACCATACTTCCCAC 313 13 1195 Antisense
CACATCACGAACTCGTCTACGCAAA 531 195 1217 Antisense
GGATTGGGATCGACTGACGGTTGTG 95 507 1365 Antisense
Sequence Source Affymetrix Proprietary Database