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[181461_at]

Description F56C3.2 /REP_DB=WormBase Gene ID /WP=CE17893 /TR=O61758 /GB=AAC17005.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 45      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 60.5
(3)
P 		42.6
(1)
A 		6
(-3)
A 		27.5
(-0.6)
A 		55
B 40.5
(1.6)
A 		51.7
(3)
P 		26.7
(-0.1)
A 		3.4
(-3)
A 		48
C 73.8
(3)
P 		45.6
(0.4)
A 		23.4
(-1.7)
A 		9.2
(-3)
A 		65
avr 58.3
(3) 		46.6
(1.4) 		18.7
(-2.3) 		13.4
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 51.7
(3)
A 		28.8
(0.1)
A 		44.7
(2.1)
A 		39.7
(1.5)
A 		4.4
(-3)
A 		5.9
(-2.8)
A 		47
B 25.5
(-0.5)
A 		30.9
(0.1)
A 		59.2
(3)
A 		55.7
(2.6)
P 		14.1
(-1.7)
A 		1.3
(-3)
A 		58
C 33.6
(0)
A 		63
(3)
A 		13.9
(-2)
A 		29.5
(-0.4)
A 		4.1
(-3)
A 		5.8
(-2.8)
A 		59
avr 36.9
(2.2) 		40.9
(2.9) 		39.3
(2.6) 		41.6
(3) 		7.5
(-2.5) 		4.3
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 22
(3)
P 		9.2
(-0.8)
A 		1.6
(-3)
A 		4
(-2.3)
A 		20
B 12.9
(3)
A 		12.8
(3)
P 		6.2
(-0.3)
A 		0.7
(-3)
A 		12
C 24.4
(3)
P 		13.1
(0)
A 		8.1
(-1.3)
A 		1.6
(-3)
A 		23
avr 19.8
(3) 		11.7
(0.3) 		5.3
(-1.9) 		2.1
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 9.5
(2.5)
A 		10.2
(3)
A 		9.7
(2.7)
A 		10.1
(2.9)
A 		1.3
(-3)
A 		1.4
(-2.9)
A 		9
B 8.9
(0.5)
A 		10.3
(1.1)
A 		14.4
(2.8)
A 		14.8
(3)
P 		5.7
(-0.8)
A 		0.5
(-3)
A 		14
C 12.4
(0.7)
A 		19.2
(3)
A 		3.5
(-2.3)
A 		5.9
(-1.5)
A 		1.3
(-3)
A 		1.9
(-2.8)
A 		18
avr 10.3
(1.5) 		13.2
(3) 		9.2
(1) 		10.3
(1.5) 		2.8
(-2.2) 		1.3
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181461_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18500
Sequence Type Exemplar sequence
Representative Public ID F56C3.2 NCBI
Target Description F56C3.2 /REP_DB=WormBase Gene ID /WP=CE17893 /TR=O61758 /GB=AAC17005.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075854(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075854 NCBI Caenorhabditis elegans F56C3.2 (F56C3.2) mRNA, complete cds. 11/11 None
SNAP00000017306 ENSEMBL cdna:SNAP chromosome:CEL140:X:1372022:1377549:1 10/11 None
GENEFINDER00000017314 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1372022:1374547:1 11/11 None
F56C3.2 ENSEMBL cdna:known chromosome:CEL140:X:1372007:1374625:1 gene:F56C3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1372021-1374547(+) 90.72 100.0
Public Domain and Genome References
Gene Title
Ensembl F56C3.2
Entrez Gene 186361 Entrez gene
SwissProt O61758 EMBL-EBI
WormBase CE35725 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17005 Hypothetical protein F56C3.2 [Caenorhabditis elegans] ref|NP_508255.2| F56C3.2 [Caenorhabditis elegans] 0.0
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 1.0E-29
blast CAB07211 Hypothetical protein F47H4.4 [Caenorhabditis elegans] ref|NP_507388.1| F47H4.4 [Caenorhabditis elegans] 9.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.9E-42
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.1E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.9E-42
Sequence
Target Sequence 
>C. ELEGANS:181461_AT
aaacgattttgcattgaggcggacaatagtaattttatagcatctgttttgaaagtatta
aagtcaagaaagaccattctttgtgtcaaggaaattagtattgatggtcttgaagagtgt
caaatggcggagatgctctcatgtgtaaaaccccgtacgctggaaaaaattgtcctacaa
aaaaactacgacgaaaatcaaacaattgagctcaaggagattgttcaactggagcaatgg
aagtatgccaaagagcttgtgacagagtttaatgatggagcaattgctgttaggtatcaa
gattattgtcattttgataaaatctctgtgaagcttgctcggtttccaaaagaagacttt
tacaacattagagatattctcacaagtcgatcaagttttcaagaagctaaatttcaattt
ccacgaatagaactccatcaaatatcggaactgttcaatctgggaacttatcaaaaagag
gaattcgagtatcctggaattgagacattttataatcacgagtttaatggcagattcagg
gtgtctattcgtcccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGATTTTGCATTGAGGCGGACA 272 125 976 Antisense
AGACCATTCTTTGTGTCAAGGAAAT 38 69 1046 Antisense
GTGTCAAATGGCGGAGATGCTCTCA 253 487 1092 Antisense
ATGCTCTCATGTGTAAAACCCCGTA 123 31 1108 Antisense
GGAAGTATGCCAAAGAGCTTGTGAC 97 533 1214 Antisense
GGAGCAATTGCTGTTAGGTATCAAG 682 519 1252 Antisense
AAAATCTCTGTGAAGCTTGCTCGGT 434 133 1294 Antisense
GAAGCTTGCTCGGTTTCCAAAAGAA 363 341 1305 Antisense
ATATTCTCACAAGTCGATCAAGTTT 441 19 1349 Antisense
ATTTCCACGAATAGAACTCCATCAA 91 17 1392 Antisense
GATTCAGGGTGTCTATTCGTCCCAG 259 431 1508 Antisense
Sequence Source Affymetrix Proprietary Database