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[181460_at]

Description T19D7.1 /REP_DB=WormBase Gene ID /WP=CE07517 /TR=Q22588 /GB=AAK39299.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 82      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 54      6grp_total > 74      4grp_total > 22      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 306
1 2 3 4 range
A 464.5
(3)
P 		461.9
(2.9)
P 		352.3
(-3)
P 		435.5
(1.4)
P 		112
B 416
(0.2)
P 		383.7
(-0.6)
P 		287.3
(-3)
P 		527.6
(3)
P 		240
C 593.4
(3)
P 		319.7
(-3)
P 		414
(-0.9)
P 		531.1
(1.6)
P 		274
avr 491.3
(2.7) 		388.4
(-1.5) 		351.2
(-3) 		498.1
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1289
1 2 3 4 5 6 range
A 461.8
(-3)
P 		649.8
(-2)
P 		1123.7
(0.6)
P 		1559.5
(3)
P 		1139.2
(0.7)
P 		1010.9
(0)
P 		1098
B 509
(-3)
P 		1119.5
(1.6)
P 		1140.8
(1.8)
P 		1298
(3)
P 		1233.5
(2.5)
P 		1042.7
(1.1)
P 		789
C 500
(-3)
P 		835.2
(-1.4)
P 		889
(-1.1)
P 		1751.1
(3)
P 		967.8
(-0.8)
P 		1105.8
(-0.1)
P 		1251
avr 490.3
(-3) 		868.2
(-0.8) 		1051.2
(0.2) 		1536.2
(3) 		1113.5
(0.6) 		1053.1
(0.2) 		1046
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 169.1
(3)
P 		100.3
(-0.9)
P 		92.1
(-1.4)
P 		63.8
(-3)
P 		105
B 132.7
(3)
P 		94.8
(-0.4)
P 		66.6
(-3)
P 		112.4
(1.2)
P 		66
C 196.4
(3)
P 		91.9
(-2.9)
P 		144.3
(0.1)
P 		89.6
(-3)
P 		107
avr 166.1
(3) 		95.7
(-2.5) 		101
(-2) 		88.6
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 85.1
(-3)
P 		231.1
(-0.2)
P 		244.7
(0.1)
P 		395.5
(3)
P 		343.7
(2)
P 		246.1
(0.1)
P 		310
B 177.1
(-3)
P 		372.6
(0.6)
P 		277
(-1.2)
P 		343.8
(0.1)
P 		501.1
(3)
P 		388.8
(0.9)
P 		324
C 185.3
(-3)
P 		254.8
(-0.7)
P 		226.3
(-1.7)
P 		352.1
(2.4)
P 		313.2
(1.2)
P 		370.2
(3)
P 		185
avr 149.2
(-3) 		286.2
(0.5) 		249.3
(-0.5) 		363.8
(2.4) 		386
(3) 		335
(1.7) 		237
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181460_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18514
Sequence Type Exemplar sequence
Representative Public ID T19D7.1 NCBI
Target Description T19D7.1 /REP_DB=WormBase Gene ID /WP=CE07517 /TR=Q22588 /GB=AAK39299.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075738(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075738 NCBI Caenorhabditis elegans T19D7.1 (T19D7.1) mRNA, complete cds. 11/11 None
GENEFINDER00000005321 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:673042:676427:1 11/11 None
T19D7.1 ENSEMBL cdna:known chromosome:CEL140:X:672651:676224:1 gene:T19D7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005315 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:672650-676224(+) 94.65 100.0
Public Domain and Genome References
Gene Title
Ensembl T19D7.1
Entrez Gene 188603 Entrez gene
SwissProt Q22588 EMBL-EBI
WormBase CE07517 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39299 Hypothetical protein T19D7.1 [Caenorhabditis elegans] ref|NP_508139.1| T19D7.1 [Caenorhabditis elegans] 0.0
blast AAK39299 Hypothetical protein T19D7.1 [Caenorhabditis elegans] ref|NP_508139.1| T19D7.1 [Caenorhabditis elegans] 1.0E-177
blast CAE63634 Hypothetical protein CBG08130 [Caenorhabditis briggsae] 3.0E-42
blast CAE63634 Hypothetical protein CBG08130 [Caenorhabditis briggsae] 2.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508139.1 3 374-396,401-418,433-455
T19D7.1 3 374-396,401-418,433-455
GENEFINDER00000005321 4 102-124,278-300,344-366,409-431
Sequence
Target Sequence 
>C. ELEGANS:181460_AT
ggaacaatctgatagccatccattcagcaataacacgtgtacattgagctggaagtacac
aaatctggataattatcagaaaatcgtcattgaaccttcaaacttgatggattcagttga
aagagagcatagtcggcagttcatactcaaagacgttacttttgaatcatcaggagatga
tgaacaacgattgcattatactatcacacagacaccacaatatcttctattacatttttt
cttcccggcattgttgtttttaattccgccttggttatccctcctacttggaccaatggc
aattacccggtgtatcatcttgatgacgtcactaattctattgtccaaccactatgatcg
aaatgtgactgtatttccaattgatgcaagtttaaatgcaatttccatctggcaactgtt
cacttatatctacgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACAATCTGATAGCCATCCATTC 229 529 912 Antisense
GCCATCCATTCAGCAATAACACGTG 640 279 926 Antisense
GAGCATAGTCGGCAGTTCATACTCA 402 389 1036 Antisense
TATACTATCACACAGACACCACAAT 612 659 1108 Antisense
GCATTGTTGTTTTTAATTCCGCCTT 418 305 1159 Antisense
TCCCTCCTACTTGGACCAATGGCAA 570 595 1189 Antisense
GGCAATTACCCGGTGTATCATCTTG 254 533 1209 Antisense
GATGACGTCACTAATTCTATTGTCC 368 411 1233 Antisense
TCTATTGTCCAACCACTATGATCGA 574 615 1248 Antisense
GCAATTTCCATCTGGCAACTGTTCA 376 323 1309 Antisense
GCAACTGTTCACTTATATCTACGTC 690 319 1323 Antisense
Sequence Source Affymetrix Proprietary Database