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[181459_at]

Description F49H6.13 /REP_DB=WormBase Gene ID /WP=CE19880 /TR=Q9XTH9 /GB=CAA20971.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 19      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 43.1
(-3)
A 		44.4
(-2.3)
A 		47.4
(-0.8)
A 		54.6
(3)
A 		12
B 43.7
(1)
P 		44.6
(1.2)
A 		15.3
(-3)
A 		57.6
(3)
M 		42
C 34
(-3)
A 		52.9
(-1.5)
A 		38.9
(-2.6)
A 		107.8
(3)
P 		74
avr 40.3
(-2) 		47.3
(-1) 		33.9
(-3) 		73.3
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 70
(3)
P 		22.4
(-2.7)
A 		42.5
(-0.3)
A 		27.5
(-2.1)
A 		30.5
(-1.7)
A 		19.7
(-3)
A 		50
B 37.5
(-0.7)
A 		52.1
(3)
A 		32
(-2)
P 		32.5
(-1.9)
A 		36.3
(-1)
A 		28.2
(-3)
M 		24
C 44.3
(0.9)
P 		63.8
(3)
A 		29.9
(-0.7)
A 		9
(-3)
A 		9.3
(-3)
A 		38.2
(0.2)
A 		55
avr 50.6
(3) 		46.1
(2) 		34.8
(-0.4) 		23
(-3) 		25.4
(-2.5) 		28.7
(-1.8) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.7
(3)
A 		9.6
(-1.8)
A 		12.4
(0.4)
A 		8
(-3)
A 		8
B 13.9
(3)
P 		11
(1.3)
A 		3.5
(-3)
A 		12.3
(2.1)
M 		10
C 11.3
(-3)
A 		15.2
(0.4)
A 		13.6
(-1)
A 		18.2
(3)
P 		7
avr 13.6
(3) 		11.9
(0.3) 		9.8
(-3) 		12.8
(1.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 12.9
(3)
P 		8
(-0.6)
A 		9.3
(0.3)
A 		7
(-1.4)
A 		9.2
(0.3)
A 		4.8
(-3)
A 		8
B 13.1
(0.3)
A 		17.3
(3)
A 		7.8
(-3)
P 		8.6
(-2.5)
A 		14.7
(1.4)
A 		10.5
(-1.3)
M 		10
C 16.4
(1.9)
P 		19.5
(3)
A 		7.6
(-1)
A 		1.8
(-3)
A 		3
(-2.6)
A 		12.8
(0.7)
A 		18
avr 14.1
(2.5) 		14.9
(3) 		8.2
(-1.4) 		5.8
(-3) 		9
(-0.9) 		9.4
(-0.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181459_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14379
Sequence Type Exemplar sequence
Representative Public ID F49H6.13 NCBI
Target Description F49H6.13 /REP_DB=WormBase Gene ID /WP=CE19880 /TR=Q9XTH9 /GB=CAA20971.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074903(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074903 NCBI Caenorhabditis elegans F49H6.13 (F49H6.13) mRNA, complete cds. 11/11 None
F49H6.13 ENSEMBL cdna:known chromosome:CEL140:V:17011251:17011966:-1 gene:F49H6.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003171 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17011250-17011966(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49H6.13
Entrez Gene 186080 Entrez gene
SwissProt Q9XTH9 EMBL-EBI
WormBase CE19880 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20971 Hypothetical protein F49H6.13 [Caenorhabditis elegans] emb|CAB04448.1| Hypothetical protein F49H6.13 [Caenorhabditis elegans] ref|NP_507304.1| F49H6.13 [Caenorhabditis elegans] 2.0E-92
blast CAB04447 Hypothetical protein F49H6.3 [Caenorhabditis elegans] ref|NP_507307.1| F49H6.3 [Caenorhabditis elegans] 5.0E-65
blast CAB04869 Hypothetical protein T27C5.8 [Caenorhabditis elegans] ref|NP_507407.1| T27C5.8 [Caenorhabditis elegans] 7.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR009545 EMBL-EBI Protein of unknown function DUF1164 7.1E-123
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507304.1 4 7-29,49-71,92-114,129-151
F49H6.13 4 7-29,49-71,92-114,129-151
Sequence
Target Sequence 
>C. ELEGANS:181459_AT
atttgcgcaattgtctgtaacttttttgcggttttctcaatcgcttgggtaacagattgg
agcggaagcattggactttttcccctttgggatatcacaatcggatggtatatagctgca
agctcactgatgtatgtatcatttctttgtagtgttctagtatttattcagttgattatc
acttccaataacgttagaaagaacggatattctcacttgcaaagaggaaaattcatttca
attgcagttttctcactgctcatcacagtttcaacagctgttgccgttattctgatcgct
gtcaatttgccacatatgaacaaaaaatattacgacaatgctaccctgggatactctgca
tggttcagtgtagctggtgcagtgttctacctcgttgtcgctggcttctcaatcagttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGCGCAATTGTCTGTAACTTTT 383 17 52 Antisense
TGCGGTTTTCTCAATCGCTTGGGTA 393 583 78 Antisense
GCGGAAGCATTGGACTTTTTCCCCT 200 293 113 Antisense
TCCCCTTTGGGATATCACAATCGGA 481 595 132 Antisense
ATAGCTGCAAGCTCACTGATGTATG 368 21 163 Antisense
AATTGCAGTTTTCTCACTGCTCATC 286 179 291 Antisense
TGTTGCCGTTATTCTGATCGCTGTC 526 563 330 Antisense
GATCGCTGTCAATTTGCCACATATG 694 415 345 Antisense
TTACGACAATGCTACCCTGGGATAC 121 683 381 Antisense
GTAGCTGGTGCAGTGTTCTACCTCG 373 457 421 Antisense
TGTCGCTGGCTTCTCAATCAGTTAC 601 557 447 Antisense
Sequence Source Affymetrix Proprietary Database