[Home] | [Total List]

[181458_at]

Description T07F8.3 /REP_DB=WormBase Gene ID /WP=CE01391 /TR=P91438 /GB=AAB38098.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 46      6grp_cgc > 39      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 54.4
(3)
A 		10.3
(-3)
A 		35.9
(0.5)
A 		18.1
(-1.9)
A 		44
B 59.6
(3)
A 		20
(-3)
A 		28.6
(-1.7)
A 		45.9
(0.9)
A 		40
C 8.1
(-3)
A 		70.8
(3)
A 		36.2
(-0.3)
A 		32.6
(-0.7)
A 		63
avr 40.7
(3) 		33.7
(-1.9) 		33.6
(-2) 		32.2
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 95.8
(0.6)
A 		45
(-3)
A 		48.4
(-2.8)
A 		62
(-1.8)
A 		71.7
(-1.1)
M 		130.2
(3)
P 		85
B 41.2
(-0.4)
A 		51.8
(0.6)
A 		12.8
(-3)
A 		41.7
(-0.4)
A 		57.9
(1.1)
A 		78.3
(3)
P 		66
C 37.9
(-1.1)
A 		10.5
(-3)
A 		25.8
(-1.9)
A 		48.9
(-0.3)
P 		55.7
(0.2)
M 		96.3
(3)
P 		86
avr 58.3
(-0.6) 		35.8
(-2.4) 		29
(-3) 		50.9
(-1.2) 		61.8
(-0.3) 		101.6
(3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.8
(3)
A 		2.2
(-3)
A 		9.4
(-0.5)
A 		2.6
(-2.9)
A 		18
B 19
(3)
A 		5
(-3)
A 		6.6
(-2.3)
A 		9.8
(-0.9)
A 		14
C 2.7
(-3)
A 		20.4
(3)
A 		12.6
(0.4)
A 		5.5
(-2.1)
A 		18
avr 13.8
(3) 		9.2
(-0.5) 		9.5
(-0.3) 		6
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 17.7
(-1)
A 		16
(-1.4)
A 		10.5
(-3)
A 		15.7
(-1.5)
A 		21.6
(0.1)
M 		31.7
(3)
P 		21
B 14.3
(-0.4)
A 		17.2
(0.2)
A 		3.1
(-3)
A 		11.1
(-1.2)
A 		23.5
(1.7)
A 		29.2
(3)
P 		26
C 14.1
(-0.8)
A 		3.2
(-3)
A 		6.6
(-2.3)
A 		9.8
(-1.6)
P 		18
(0.1)
M 		32.3
(3)
P 		29
avr 15.4
(-0.9) 		12.1
(-1.7) 		6.7
(-3) 		12.2
(-1.6) 		21
(0.5) 		31.1
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181458_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4748
Sequence Type Exemplar sequence
Representative Public ID T07F8.3 NCBI
Target Description T07F8.3 /REP_DB=WormBase Gene ID /WP=CE01391 /TR=P91438 /GB=AAB38098.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063078(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063078 NCBI Caenorhabditis elegans defective in Germ Line Development family member (gld-3) (gld-3) mRNA, complete cds. 11/11 None
GENEFINDER00000013185 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7132573:7136962:1 11/11 None
T07F8.3a ENSEMBL cdna:known chromosome:CEL140:II:7132573:7136962:1 gene:T07F8.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013178 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174174 2 1 NM_063078 181458_at (11)
NM_063079 175323_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7132568-7136958(+) 100.0 100.0
Public Domain and Genome References
Ensembl T07F8.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK77629 Defective in germ line development protein 3, isoform a [Caenorhabditis elegans] ref|NP_495479.1| defective in Germ Line Development family member (gld-3) [Caenorhabditis elegans] 0.0
blast T25864 hypothetical protein T07F8.3 - Caenorhabditis elegans 0.0
blast AAK77630 Defective in germ line development protein 3, isoform b [Caenorhabditis elegans] ref|NP_495480.1| defective in Germ Line Development family member (gld-3) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181458_AT
gagtcaccgcacaatgattctgatactacagtttctgcaagtggcttcggaaatgattta
atggatggagactttgttcagagattcctatccaatgcaaatatcaatgaatcgggaaga
agaccaagaacagttagctgttttaccgagaaagatggtcaatccgcccgatacatcgat
tctgatggtgcatacagcgttgttgatcatgcatccacacatcaatctcgttcatatgat
agcttcagaaaagttggcgacaacggagtcacaaaaaccatattggaaccacgtgctcga
gtagagaaagattatggcaaaataagcctagaacacaagacgaaatactcaaatgagtac
ggtgatgaagagaagtcagcagaaaatgatacgtcttcgttgggatctagacaatacaga
attgatccaatgaaacgaaacatctacatattgagaaatcgggatttttccaatagcttc
ttctacttcttacatcaattttcgctatatatgaaccctatttgtgcatatcgtatacgg
ctccatcaatttttatcttacaaaccatccatttgcctgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCACCGCACAATGATTCTGATA 524 399 2200 Antisense
CTACAGTTTCTGCAAGTGGCTTCGG 678 225 2225 Antisense
GACTTTGTTCAGAGATTCCTATCCA 582 371 2269 Antisense
CAATCCGCCCGATACATCGATTCTG 227 181 2359 Antisense
GCGTTGTTGATCATGCATCCACACA 465 291 2396 Antisense
CATCCACACATCAATCTCGTTCATA 565 211 2411 Antisense
ATTGGAACCACGTGCTCGAGTAGAG 46 3 2481 Antisense
TTTTCCAATAGCTTCTTCTACTTCT 424 677 2665 Antisense
TTCTACTTCTTACATCAATTTTCGC 394 691 2680 Antisense
GTGCATATCGTATACGGCTCCATCA 701 479 2723 Antisense
TACAAACCATCCATTTGCCTGTCGA 592 641 2758 Antisense
Sequence Source Affymetrix Proprietary Database