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[181457_at]

Description F37E3.2 /REP_DB=WormBase Gene ID /WP=CE09998 /TR=O01764 /GB=AAB54134.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 45      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 11.7
(-1.9)
A 		44
(3)
A 		4.1
(-3)
A 		12.3
(-1.8)
A 		40
B 7.5
(-0.1)
A 		11.5
(3)
A 		3.8
(-3)
A 		3.9
(-2.9)
A 		8
C 64.5
(3)
A 		17.1
(-1.8)
A 		5.6
(-3)
A 		10.8
(-2.5)
A 		59
avr 27.9
(3) 		24.2
(2.1) 		4.5
(-3) 		9
(-1.8) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 64.3
(3)
A 		40.9
(0.6)
A 		10.5
(-2.5)
A 		29.8
(-0.5)
A 		6.9
(-2.9)
A 		5.9
(-3)
A 		58
B 49.7
(3)
A 		49.3
(2.9)
A 		35.1
(0.9)
A 		7.1
(-3)
A 		15.4
(-1.8)
A 		15.2
(-1.9)
A 		43
C 48.8
(3)
A 		20.4
(-0.9)
A 		27.3
(0.1)
A 		23.8
(-0.4)
A 		8.2
(-2.5)
A 		4.7
(-3)
A 		44
avr 54.3
(3) 		36.9
(0.7) 		24.3
(-0.9) 		20.2
(-1.5) 		10.2
(-2.8) 		8.6
(-3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 4.3
(-0.7)
A 		9.6
(3)
A 		1.1
(-3)
A 		1.8
(-2.5)
A 		9
B 2.4
(1.8)
A 		2.8
(3)
A 		0.9
(-2.7)
A 		0.8
(-3)
A 		2
C 21.4
(3)
A 		4.9
(-2.1)
A 		2
(-2.9)
A 		1.8
(-3)
A 		20
avr 9.4
(3) 		5.8
(0.3) 		1.3
(-3) 		1.5
(-2.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 11.9
(1.8)
A 		14.5
(3)
A 		2.3
(-2.6)
A 		7.6
(-0.2)
A 		2.1
(-2.7)
A 		1.4
(-3)
A 		13
B 17.3
(3)
A 		16.4
(2.6)
A 		8.5
(-0.4)
A 		1.9
(-3)
A 		6.2
(-1.3)
A 		5.7
(-1.5)
A 		15
C 18.1
(3)
A 		6.2
(-1.3)
A 		7
(-1)
A 		4.8
(-1.8)
A 		2.7
(-2.6)
A 		1.6
(-3)
A 		17
avr 15.8
(3) 		12.4
(1.4) 		5.9
(-1.6) 		4.8
(-2.1) 		3.7
(-2.6) 		2.9
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181457_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2011
Sequence Type Exemplar sequence
Representative Public ID F37E3.2 NCBI
Target Description F37E3.2 /REP_DB=WormBase Gene ID /WP=CE09998 /TR=O01764 /GB=AAB54134.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059450(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059450 NCBI Caenorhabditis elegans F37E3.2 (F37E3.2) mRNA, complete cds. 11/11 None
F37E3.2 ENSEMBL cdna:known chromosome:CEL140:I:6433928:6436483:-1 gene:F37E3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000006897 8/11 Cross Hyb Matching Probes None
SNAP00000006894 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6433856-6436412(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37E3.2
Entrez Gene 185427 Entrez gene
WormBase CE39017 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491851 F37E3.2 [Caenorhabditis elegans] 0.0
blast AAB54134 Hypothetical protein F37E3.2 [Caenorhabditis elegans] 0.0
blast CAE67186 Hypothetical protein CBG12622 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.031
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.32
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.03
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.05
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.01
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491851.1 1 490-512
F37E3.2 1 490-512
Sequence
Target Sequence 
>C. ELEGANS:181457_AT
ttcttctatgcctcccgaagtgatggctatgttgagtggtctgtcacaactaagaattga
aggaaatccattgacggaattcccagcctcatttttactcatctctcgtgaaaacttccg
tctccttcgtcaacttctccactcaacaatgactcttcccgtttggctccgcgagccatg
tactccatactattggtcaatgcacctagcaaatcgaaccaataatctaaagtcatttgt
aaatcaatatagtgagatgagaatgttaaaaagcggactgggttactgtaaggagcaata
tgactggatgttggaacaaatggaagtttatagagaattagagaagaattccggatgcta
ttctcttcgacgtcttcgttcttctttatcttcaaaacctgtcccaaaaatttcgaaaaa
ctctacgaattctctaattctctcaattcctcatgatctatcatcccccgcctttcatat
tccaattcttttattaatatctttatgtgcaaactttttgttacttttttcgattcttat
gtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTCTATGCCTCCCGAAGTGATG 423 689 1011 Antisense
TGATGGCTATGTTGAGTGGTCTGTC 87 567 1031 Antisense
AATCCATTGACGGAATTCCCAGCCT 145 167 1075 Antisense
CTCATTTTTACTCATCTCTCGTGAA 204 229 1098 Antisense
GTTTGGCTCCGCGAGCCATGTACTC 222 453 1171 Antisense
GCCATGTACTCCATACTATTGGTCA 98 281 1185 Antisense
GTCAATGCACCTAGCAAATCGAACC 384 463 1206 Antisense
TCTTTATCTTCAAAACCTGTCCCAA 44 617 1393 Antisense
AATTCTCTAATTCTCTCAATTCCTC 444 177 1438 Antisense
CAATTCCTCATGATCTATCATCCCC 132 181 1454 Antisense
GTTACTTTTTTCGATTCTTATGTGT 229 447 1530 Antisense
Sequence Source Affymetrix Proprietary Database