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[181456_at]

Description F57C9.3 /REP_DB=WormBase Gene ID /WP=CE28473 /TR=O01822 /GB=AAB54186.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 40.1
(0.9)
A 		33.7
(-0.1)
A 		15.1
(-3)
A 		53.2
(3)
A 		38
B 5.6
(-2.3)
A 		0.6
(-3)
A 		31.3
(1.1)
A 		46
(3)
A 		45
C 4.3
(-3)
A 		34.4
(0.1)
A 		14.5
(-2)
A 		63.1
(3)
A 		59
avr 16.7
(-3) 		22.9
(-2) 		20.3
(-2.4) 		54.1
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 7
(1.8)
A 		7.3
(2)
A 		8.5
(3)
A 		1
(-3)
A 		5.7
(0.8)
A 		2
(-2.2)
A 		8
B 23.2
(-0.2)
A 		3.4
(-3)
A 		45.4
(3)
A 		15.6
(-1.3)
A 		3.4
(-3)
A 		32.3
(1.1)
A 		42
C 0.7
(-3)
A 		2.4
(-2.7)
A 		25.3
(1.2)
A 		24
(1)
A 		16.8
(-0.2)
A 		35.8
(3)
A 		35
avr 10.3
(-1.4) 		4.4
(-3) 		26.4
(3) 		13.5
(-0.5) 		8.6
(-1.9) 		23.4
(2.2) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 14.6
(3)
A 		7.3
(-1.1)
A 		3.9
(-3)
A 		7.8
(-0.8)
A 		11
B 1.8
(-2)
A 		0.2
(-3)
A 		7.3
(1.4)
A 		9.8
(3)
A 		10
C 1.4
(-3)
A 		9.9
(2.5)
A 		5.1
(-0.6)
A 		10.6
(3)
A 		9
avr 5.9
(-2.3) 		5.8
(-2.4) 		5.4
(-3) 		9.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.3
(-0.4)
A 		2.6
(3)
A 		1.8
(0.9)
A 		0.3
(-3)
A 		1.7
(0.7)
A 		0.5
(-2.5)
A 		2
B 8.1
(0.9)
A 		1.1
(-3)
A 		11
(2.4)
A 		4.1
(-1.3)
A 		1.4
(-2.8)
A 		12
(3)
A 		11
C 0.3
(-3)
A 		0.7
(-2.8)
A 		6.4
(0.1)
A 		4.8
(-0.7)
A 		5.4
(-0.4)
A 		12
(3)
A 		12
avr 3.2
(-1.5) 		1.5
(-3) 		6.4
(1.4) 		3.1
(-1.6) 		2.8
(-1.8) 		8.2
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181456_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.814
Sequence Type Exemplar sequence
Representative Public ID F57C9.3 NCBI
Target Description F57C9.3 /REP_DB=WormBase Gene ID /WP=CE28473 /TR=O01822 /GB=AAB54186.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059060
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000003863 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4836188:4841383:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059060 6/11 Cross Hyb Matching Probes None
SNAP00000003851 6/11 Cross Hyb Matching Probes None
F57C9.3 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4833983-4840172(+) 86.45 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T15217 hypothetical protein F57C9.3 - Caenorhabditis elegans 2.0E-80
blast AAK73886 Hypothetical protein F57C9.3 [Caenorhabditis elegans] ref|NP_491461.2| F57C9.3 [Caenorhabditis elegans] 1.0E-54
blast CAE60351 Hypothetical protein CBG03947 [Caenorhabditis briggsae] 1.0E-12
Sequence
Target Sequence 
>C. ELEGANS:181456_AT
gtctatcgagatgagcaacaccgagcacaacgtcgaatcgaagaacgtcacagatacatt
agacgagattttacgactccaagaagacattcaggcacgaataggaagttcaaatcacaa
tctggaaacgaatttcgagagtatcaaggatttcaaaaaaaacacaaaaatcgagaaaaa
atcgaaattttctctacgaaaaaaatcttgttttggtttttcattcgcattttattatcc
agacgcgaaaatgttgcgatttttgcaacaaaaatacggtacctggtctcgaaacgatat
ttcttgtaaaataaaatcggatgtttcccgtgctcatgcctacattccgattctgaatca
aatatcgaaggatatgatcgaaatctgcgaacggacacaagcattgaagaaaaagacgag
tcaattggaattatccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTATCGAGATGAGCAACACCGAG 448 469 999 Antisense
GCAACACCGAGCACAACGTCGAATC 223 317 1013 Antisense
CGTCGAATCGAAGAACGTCACAGAT 340 245 1029 Antisense
TAGACGAGATTTTACGACTCCAAGA 15 653 1058 Antisense
TTTTCATTCGCATTTTATTATCCAG 273 677 1216 Antisense
TATTATCCAGACGCGAAAATGTTGC 604 659 1231 Antisense
ACGGTACCTGGTCTCGAAACGATAT 427 1 1274 Antisense
AAAATCGGATGTTTCCCGTGCTCAT 436 133 1311 Antisense
CTCATGCCTACATTCCGATTCTGAA 102 229 1331 Antisense
AAATCTGCGAACGGACACAAGCATT 366 117 1379 Antisense
GACGAGTCAATTGGAATTATCCGAT 464 379 1413 Antisense
Sequence Source Affymetrix Proprietary Database