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[181454_s_at]

Description B0513.2B /REP_DB=WormBase Gene ID /WP=CE23510 /TR=Q9U3S3 /GB=CAB54184.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 77      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 94      6grp_total > 67      4grp_total > 63      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 291
1 2 3 4 range
A 637.2
(3)
P 		419.5
(-3)
P 		601.9
(2)
P 		457.9
(-1.9)
P 		218
B 701.9
(3)
P 		505.9
(-3)
P 		512
(-2.8)
P 		559.2
(-1.4)
P 		196
C 614.3
(1)
P 		424.8
(-3)
P 		710
(3)
P 		465
(-2.2)
P 		285
avr 651.1
(3) 		450.1
(-3) 		608
(1.7) 		494
(-1.7) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 681
1 2 3 4 5 6 range
A 308.4
(-3)
P 		472.8
(-1.1)
P 		410.4
(-1.8)
P 		367.4
(-2.3)
P 		378
(-2.2)
P 		827.7
(3)
P 		519
B 327.1
(-3)
P 		428.3
(-2.1)
P 		355.5
(-2.7)
P 		408.8
(-2.3)
P 		580.9
(-0.7)
P 		989.6
(3)
P 		663
C 434.1
(-2)
P 		440.9
(-2)
P 		332.9
(-3)
P 		335.7
(-3)
P 		415
(-2.2)
P 		951.5
(3)
P 		619
avr 356.5
(-3) 		447.3
(-2) 		366.3
(-2.9) 		370.6
(-2.9) 		458
(-1.9) 		922.9
(3) 		566
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 232
(3)
P 		91.1
(-2.1)
P 		157.3
(0.3)
P 		67
(-3)
P 		165
B 223.8
(3)
P 		125
(-2.6)
P 		118.7
(-3)
P 		119.2
(-3)
P 		105
C 203.4
(1.4)
P 		122.1
(-1.4)
P 		247.5
(3)
P 		78.4
(-3)
P 		169
avr 219.7
(3) 		112.7
(-1.9) 		174.5
(0.9) 		88.2
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 56.9
(-3)
P 		168.2
(1.6)
P 		89.4
(-1.7)
P 		93.2
(-1.5)
P 		114.1
(-0.6)
P 		201.5
(3)
P 		145
B 113.8
(-2.4)
P 		142.6
(-1.8)
P 		86.3
(-3)
P 		108.3
(-2.5)
P 		236
(0.2)
P 		369
(3)
P 		283
C 160.9
(-0.8)
P 		134.5
(-1.4)
P 		84.7
(-2.6)
P 		67.5
(-3)
P 		134.3
(-1.4)
P 		318.5
(3)
P 		251
avr 110.5
(-2.3) 		148.4
(-1.2) 		86.8
(-3) 		89.7
(-2.9) 		161.5
(-0.9) 		296.3
(3) 		210
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181454_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9477
Sequence Type Exemplar sequence
Representative Public ID B0513.2B NCBI
Target Description B0513.2B /REP_DB=WormBase Gene ID /WP=CE23510 /TR=Q9U3S3 /GB=CAB54184.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026101(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026101 NCBI Caenorhabditis elegans B0513.2 (B0513.2) mRNA, complete cds. 11/11 None
SNAP00000026161 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13882703:13884013:1 11/11 None
GENEFINDER00000026167 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13882703:13884013:1 11/11 None
B0513.2 ENSEMBL cdna:known chromosome:CEL140:IV:13882703:13884118:1 gene:B0513.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13882708-13884019(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0513.2
Entrez Gene 178353 Entrez gene
SwissProt Q9U3S3 EMBL-EBI
WormBase CE23510 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54184 Hypothetical protein B0513.2 [Caenorhabditis elegans] ref|NP_001021272.1| B0513.2 [Caenorhabditis elegans] 1.0E-113
blast T18773 hypothetical protein B0513.2a - Caenorhabditis elegans 1.0E-87
blast CAE74612 Hypothetical protein CBG22401 [Caenorhabditis briggsae] 1.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR008501 EMBL-EBI Protein of unknown function DUF783 9.2E-123
Sequence
Target Sequence 
>C. ELEGANS:181454_S_AT
agaggacactttgctccgaaagcttgtggccgacggcgaaggagttggcgatgatcgtaa
agttcagcaaattgccacgtttttccgtgaaagtagaaaggaggatgcgaagacttctgt
tcccgaagcagtgaaggttaccaaagctctcgagtttttggagttgtcgatgttgaagca
gaaaagaatatcccatatgaacaagattcatgcaactgaatgcgatcagtttgcagagga
aatcgatcaatcgatcgaagaaatgtacaaaaagatggaggtggcaaagaatgagttggc
cgatgcgaaaattgtaaaaagaaaccgtcaagaataccgaaaacttgttaatgtactaga
agaagtaccgtctcgagcagaaactacacgaaaactgggagaagtcaaagatgacttgga
acgacaacacgaacgtcagaaggtgcttgaggcgaagcttatggatcgaagaaatcatct
ccaagcattcatgattatactctccaattttcagcgtttttgtgcagaagacgacgacga
cgatgcggaagtcatgtcgaatccaggagaagatgacgatgcagcttcagtcaccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGGACACTTTGCTCCGAAAGCTT 358 67 18 Antisense
GCTCCGAAAGCTTGTGGCCGACGGC 289 297 30 Antisense
GACGGCGAAGGAGTTGGCGATGATC 61 377 49 Antisense
GGATGCGAAGACTTCTGTTCCCGAA 395 513 120 Antisense
GTTCCCGAAGCAGTGAAGGTTACCA 260 441 136 Antisense
GTACCGTCTCGAGCAGAAACTACAC 333 457 382 Antisense
GAACGTCAGAAGGTGCTTGAGGCGA 122 349 448 Antisense
CAAGCATTCATGATTATACTCTCCA 76 187 499 Antisense
ATACTCTCCAATTTTCAGCGTTTTT 10 25 514 Antisense
GACGATGCGGAAGTCATGTCGAATC 346 379 556 Antisense
ATGACGATGCAGCTTCAGTCACCGA 74 45 590 Antisense
Sequence Source Affymetrix Proprietary Database