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[181452_at]

Description Y40H7A.7 /REP_DB=WormBase Gene ID /WP=CE21818 /TR=Q9XW99 /GB=CAA22067.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 3
(-2.9)
A 		18.3
(3)
A 		2.8
(-3)
A 		3.2
(-2.8)
A 		16
B 4.5
(-2.7)
A 		21.9
(2.4)
A 		3.4
(-3)
A 		24.1
(3)
A 		21
C 4.3
(-3)
A 		25.4
(3)
A 		9
(-1.7)
A 		18.8
(1.1)
A 		21
avr 3.9
(-3) 		21.9
(3) 		5.1
(-2.6) 		15.4
(0.8) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 4.8
(3)
A 		1
(-3)
A 		1.2
(-2.7)
A 		3.1
(0.3)
A 		3.8
(1.4)
A 		2.8
(-0.2)
A 		4
B 3.9
(-2.6)
A 		15.8
(-0.4)
A 		34.9
(3)
A 		10.1
(-1.4)
A 		1.4
(-3)
A 		14.3
(-0.7)
A 		34
C 14
(0.3)
A 		3.2
(-3)
A 		22.8
(3)
A 		6.8
(-1.9)
A 		18.1
(1.6)
A 		6.8
(-1.9)
A 		20
avr 7.6
(-2.6) 		6.7
(-3) 		19.6
(3) 		6.7
(-3) 		7.8
(-2.5) 		8
(-2.4) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.1
(-2)
A 		4
(3)
A 		0.7
(-2.7)
A 		0.5
(-3)
A 		4
B 1.4
(-2.2)
A 		5.4
(3)
A 		0.8
(-3)
A 		5.1
(2.6)
A 		5
C 1.4
(-3)
A 		7.3
(3)
A 		3.1
(-1.3)
A 		3.2
(-1.2)
A 		6
avr 1.3
(-3) 		5.6
(3) 		1.5
(-2.7) 		2.9
(-0.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.9
(1.5)
A 		0.4
(-2.3)
A 		0.3
(-3)
A 		0.8
(0.8)
A 		1.1
(3)
A 		0.7
(-0)
A 		1
B 1.4
(-2.4)
A 		5.3
(0.6)
A 		8.5
(3)
A 		2.7
(-1.4)
A 		0.6
(-3)
A 		5.3
(0.6)
A 		8
C 5.2
(2.1)
A 		1
(-3)
A 		5.8
(2.9)
A 		1.4
(-2.5)
A 		5.9
(3)
A 		2.3
(-1.4)
A 		5
avr 2.5
(-1.4) 		2.2
(-1.9) 		4.9
(3) 		1.6
(-3) 		2.5
(-1.4) 		2.8
(-0.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181452_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8641
Sequence Type Exemplar sequence
Representative Public ID Y40H7A.7 NCBI
Target Description Y40H7A.7 /REP_DB=WormBase Gene ID /WP=CE21818 /TR=Q9XW99 /GB=CAA22067.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070433(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070433 NCBI Caenorhabditis elegans Y40H7A.7 (Y40H7A.7) mRNA, complete cds. 11/11 None
GENEFINDER00000019417 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15198078:15207893:1 11/11 None
Y40H7A.7 ENSEMBL cdna:known chromosome:CEL140:IV:15198078:15200111:1 gene:Y40H7A.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038376 1/11 Cross Hyb Matching Probes None
GENEFINDER00000014174 4/11 Cross Hyb Matching Probes None
GENEFINDER00000004549 3/11 Cross Hyb Matching Probes None
SNAP00000019405 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15198083-15200117(+) 100.0 100.0
chrII:1290199-1291853(-) 87.67 87.67
Public Domain and Genome References
Gene Title
Ensembl Y40H7A.7
Entrez Gene 189806 Entrez gene
SwissProt Q9XW99 EMBL-EBI
WormBase CE21818 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22068 Hypothetical protein Y40H7A.9 [Caenorhabditis elegans] ref|NP_502835.1| Y40H7A.9 [Caenorhabditis elegans] 1.0E-100
blast CAA22067 Hypothetical protein Y40H7A.7 [Caenorhabditis elegans] ref|NP_502834.1| Y40H7A.7 [Caenorhabditis elegans] 2.0E-99
blast CAA22067 Hypothetical protein Y40H7A.7 [Caenorhabditis elegans] ref|NP_502834.1| Y40H7A.7 [Caenorhabditis elegans] 2.0E-67
blast AAA50664 Hypothetical protein C18H2.1 [Caenorhabditis elegans] ref|NP_498674.2| C18H2.1 [Caenorhabditis elegans] 2.0E-29
blast CAE68098 Hypothetical protein CBG13738 [Caenorhabditis briggsae] 1.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000019417 3 208-230,354-373,420-442
Sequence
Target Sequence 
>C. ELEGANS:181452_AT
tcttgtggcaaaacgcgaaatcggccagccaccaagaaaatctagatctagaagaagaga
aagatgaagacgatgaatacgaggaagccggtgaaacaagcaacacctaccaatcgggaa
tttcggatgacgacgatgaagaccgggattcttcaatttcagacggagatcttcatagct
ggactaaaaccaatgtgatgtcaacgtgcaagattgatccagaacgcggcaaacatttgg
gtggccgctacaattcctccagagctcctccacaccttcagtatctaccccaattcggtg
aatcatcagattcttccaggaagacttctcaattggcctatcagcgttcattctacatat
tgtatccggattcgaaggacagttcccgagtgcggattttggagatattttctcccgaca
gcttgaacgcacgaagaaagatgagccaaaaaaagaaacaccatcacactgatcgctcga
agggaaacaactgtcttattcggcttaattctgctattaattttttgttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTGTGGCAAAACGCGAAATCGGC 147 611 62 Antisense
TGACGACGATGAAGACCGGGATTCT 543 569 189 Antisense
GACCGGGATTCTTCAATTTCAGACG 700 373 202 Antisense
AATTTCAGACGGAGATCTTCATAGC 548 173 216 Antisense
AAACCAATGTGATGTCAACGTGCAA 428 125 248 Antisense
ATGTCAACGTGCAAGATTGATCCAG 710 47 259 Antisense
ATCAGCGTTCATTCTACATATTGTA 230 29 401 Antisense
CCATCACACTGATCGCTCGAAGGGA 483 269 522 Antisense
GGGAAACAACTGTCTTATTCGGCTT 520 491 543 Antisense
GTCTTATTCGGCTTAATTCTGCTAT 468 467 554 Antisense
ATTCTGCTATTAATTTTTTGTTGTT 276 11 569 Antisense
Sequence Source Affymetrix Proprietary Database