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[181451_at]

Description EGAP2.2 /REP_DB=WormBase Gene ID /WP=CE04324 /TR=Q19074 /GB=AAA83591.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 42      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.3
(-3)
A 		2.3
(1.3)
A 		2.7
(3)
A 		1.5
(-2.1)
A 		1
B 1.3
(-2.5)
A 		3.6
(3)
A 		1.7
(-1.6)
A 		1.1
(-3)
A 		3
C 2.1
(-1.4)
A 		2.8
(0.4)
A 		1.5
(-3)
A 		3.8
(3)
A 		2
avr 1.6
(-3) 		2.9
(3) 		2
(-1.2) 		2.1
(-0.7) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 4.7
(3)
A 		1.9
(-1.8)
A 		1.2
(-3)
A 		2
(-1.6)
A 		2.6
(-0.6)
A 		1.5
(-2.5)
A 		4
B 3.1
(2.2)
A 		3.4
(3)
A 		2
(-0.7)
A 		1.2
(-2.7)
A 		1.6
(-1.7)
A 		1.1
(-3)
A 		2
C 1.2
(-2.4)
A 		3
(3)
A 		2.6
(1.8)
A 		2
(0)
A 		1
(-3)
A 		1.2
(-2.4)
A 		2
avr 3
(3) 		2.8
(2.3) 		1.9
(-0.9) 		1.7
(-1.6) 		1.7
(-1.6) 		1.3
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.5
(0.6)
A 		0.5
(0.6)
A 		0.7
(3)
A 		0.2
(-3)
A 		1
B 0.4
(-1.3)
A 		0.9
(3)
A 		0.4
(-1.3)
A 		0.2
(-3)
A 		1
C 0.7
(1)
A 		0.8
(3)
A 		0.5
(-3)
A 		0.6
(-1)
A 		0
avr 0.5
(0) 		0.7
(3) 		0.5
(0) 		0.3
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.9
(3)
A 		0.7
(1)
A 		0.3
(-3)
A 		0.5
(-1)
A 		0.8
(2)
A 		0.4
(-2)
A 		1
B 1.1
(3)
A 		1.1
(3)
A 		0.5
(-1.5)
A 		0.3
(-3)
A 		0.7
(-0)
A 		0.4
(-2.3)
A 		1
C 0.5
(-1)
A 		0.9
(3)
A 		0.7
(1)
A 		0.4
(-2)
A 		0.3
(-3)
A 		0.4
(-2)
A 		1
avr 0.8
(1.8) 		0.9
(3) 		0.5
(-1.8) 		0.4
(-3) 		0.6
(-0.6) 		0.4
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181451_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5743
Sequence Type Exemplar sequence
Representative Public ID EGAP2.2 NCBI
Target Description EGAP2.2 /REP_DB=WormBase Gene ID /WP=CE04324 /TR=Q19074 /GB=AAA83591.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062580(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062580 NCBI Caenorhabditis elegans EGAP2.2 (EGAP2.2) mRNA, complete cds. 11/11 None
EGAP2.2 ENSEMBL cdna:known chromosome:CEL140:II:5230057:5230477:1 gene:EGAP2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5230054-5230475(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl EGAP2.2
Entrez Gene 184048 Entrez gene
SwissProt Q19074 EMBL-EBI
WormBase CE04324 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83591 Hypothetical protein EGAP2.2 [Caenorhabditis elegans] ref|NP_494981.1| EGAP2.2 [Caenorhabditis elegans] 7.0E-29
Sequence
Target Sequence 
>C. ELEGANS:181451_AT
atgtgcagcacgttcatgcacaaattttataattcattttattttggagtcatgctcaca
acgcgaaaagaagagcaaatgctgagcaagatcgtttggagcttgctgaagccgcagcta
tcgagccgcagctatctttacaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGCAGCACGTTCATGCACAAAT 656 49 13 Antisense
GCACGTTCATGCACAAATTTTATAA 249 315 20 Antisense
AATTCATTTTATTTTGGAGTCATGC 68 177 43 Antisense
TTGGAGTCATGCTCACAACGCGAAA 85 705 56 Antisense
AGTCATGCTCACAACGCGAAAAGAA 334 61 60 Antisense
ATGCTGAGCAAGATCGTTTGGAGCT 246 41 91 Antisense
AGATCGTTTGGAGCTTGCTGAAGCC 549 65 101 Antisense
TGGAGCTTGCTGAAGCCGCAGCTAT 79 549 109 Antisense
TGCTGAAGCCGCAGCTATCGAGCCG 328 583 116 Antisense
TATCGAGCCGCAGCTATCTTTACAA 126 659 131 Antisense
TCGAGCCGCAGCTATCTTTACAATA 163 603 133 Antisense
Sequence Source Affymetrix Proprietary Database