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[181450_at]

Description K02F3.9 /REP_DB=WormBase Gene ID /WP=CE01355 /TR=Q21151 /GB=AAK21424.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 86      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 78      6grp_total > 88      4grp_total > 10      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1201
1 2 3 4 range
A 758.4
(-2.7)
P 		948.5
(-1.6)
P 		702.9
(-3)
P 		1788.1
(3)
P 		1085
B 796.7
(-2.4)
P 		819.5
(-2.3)
P 		689.9
(-3)
P 		1750.7
(3)
P 		1061
C 800.3
(-2.6)
P 		713.5
(-3)
P 		798
(-2.6)
P 		1891
(3)
P 		1178
avr 785.1
(-2.7) 		827.2
(-2.5) 		730.3
(-3) 		1809.9
(3) 		1080

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1568
1 2 3 4 5 6 range
A 1060.8
(-2.4)
P 		1027.6
(-2.6)
P 		1671.2
(2.2)
P 		978.5
(-3)
P 		1646.9
(2)
P 		1775.6
(3)
P 		797
B 1081.6
(-3)
P 		1373.6
(-1.8)
P 		1745.3
(-0.3)
P 		1213.8
(-2.5)
P 		2093.2
(1.1)
P 		2546.8
(3)
P 		1465
C 1027.8
(-3)
P 		1480.2
(-1)
P 		1294.2
(-1.8)
P 		1272.6
(-1.9)
P 		1278.6
(-1.9)
P 		2376.1
(3)
P 		1348
avr 1056.7
(-3) 		1293.8
(-1.8) 		1570.2
(-0.4) 		1155
(-2.5) 		1672.9
(0.1) 		2232.8
(3) 		1176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 276.1
(3)
P 		205.9
(-1.6)
P 		183.7
(-3)
P 		261.7
(2.1)
P 		92
B 254.1
(-0.3)
P 		202.4
(-1.8)
P 		159.9
(-3)
P 		373.1
(3)
P 		213
C 264.9
(0.2)
P 		205.1
(-3)
P 		278.1
(0.8)
P 		318.9
(3)
P 		114
avr 265
(0.2) 		204.5
(-3) 		207.2
(-2.9) 		317.9
(3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 754
1 2 3 4 5 6 range
A 195.5
(-3)
P 		365.5
(0.4)
P 		363.9
(0.4)
P 		248.2
(-2)
P 		497
(3)
P 		432.3
(1.7)
P 		302
B 376.4
(-2.5)
P 		457.2
(-1.7)
P 		423.8
(-2)
P 		321.5
(-3)
P 		850.5
(2.1)
P 		949.7
(3)
P 		628
C 380.9
(-1.6)
P 		451.7
(-0.8)
P 		329.4
(-2.2)
P 		255.9
(-3)
P 		413.7
(-1.2)
P 		795.4
(3)
P 		540
avr 317.6
(-2.4) 		424.8
(-1) 		372.4
(-1.7) 		275.2
(-3) 		587.1
(1.2) 		725.8
(3) 		451
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181450_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8290
Sequence Type Exemplar sequence
Representative Public ID K02F3.9 NCBI
Target Description K02F3.9 /REP_DB=WormBase Gene ID /WP=CE01355 /TR=Q21151 /GB=AAK21424.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064871(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064871 NCBI Caenorhabditis elegans K02F3.9 (K02F3.9) mRNA, complete cds. 11/11 None
GENEFINDER00000008350 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:835881:841314:-1 11/11 None
K02F3.9 ENSEMBL cdna:known chromosome:CEL140:III:840451:841348:-1 gene:K02F3.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008338 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:840525-841314(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02F3.9
Entrez Gene 175241 Entrez gene
SwissProt Q21151 EMBL-EBI
WormBase CE01355 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE56757 Hypothetical protein CBG24557 [Caenorhabditis briggsae] 0.0
blast AAK21419 Hypothetical protein K02F3.7 [Caenorhabditis elegans] 0.0
blast NP_497270 K02F3.7 [Caenorhabditis elegans] pir||T16529 hypothetical protein K02F3.7 - Caenorhabditis elegans 1.0E-156
blast AAK21424 Hypothetical protein K02F3.9 [Caenorhabditis elegans] ref|NP_497272.1| K02F3.9 [Caenorhabditis elegans] 5.0E-69
blast CAE69153 Hypothetical protein CBG15183 [Caenorhabditis briggsae] 2.0E-58
Sequence
Target Sequence 
>C. ELEGANS:181450_AT
atgacttcctctaacaagattcttctagtgtttcttttattcttttgtattcaggacgtt
gcatctgaaaatggtcttgacgttagtgcgctcagtggaaaaagcaaaaagttctttttc
gatatgacaaagcaagttatgggagttccatcattgaagccagaaaacctggcagcccaa
gcgttcttccgtagtttcttggataagtatacaaagttggatgacaaagtgaaaaatgat
atgacacagcacgtaccaaaggcgacgaaactttttgatgcagctgcaaaaaaatacaac
attgacccaagtagcgcattcaaaatgctctccacctttttcgagactttcaagaaagga
gcgtctagtgaaatggcatcgaagggtcttcaaatggctggcaaactccttggcggtaaa
gg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACTTCCTCTAACAAGATTCTTC 478 45 13 Antisense
GATTCTTCTAGTGTTTCTTTTATTC 674 429 30 Antisense
TCTTTTGTATTCAGGACGTTGCATC 176 613 53 Antisense
AATGGTCTTGACGTTAGTGCGCTCA 150 163 82 Antisense
GACGTTAGTGCGCTCAGTGGAAAAA 658 375 91 Antisense
GACAAAGCAAGTTATGGGAGTTCCA 699 363 138 Antisense
GGGAGTTCCATCATTGAAGCCAGAA 345 495 153 Antisense
AAAACCTGGCAGCCCAAGCGTTCTT 433 131 176 Antisense
TGACACAGCACGTACCAAAGGCGAC 699 569 254 Antisense
ACATTGACCCAAGTAGCGCATTCAA 243 101 311 Antisense
CTGGCAAACTCCTTGGCGGTAAAGG 679 233 410 Antisense
Sequence Source Affymetrix Proprietary Database