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[181449_at]

Description T07H3.4 /REP_DB=WormBase Gene ID /WP=CE19565 /TR=O76608 /GB=AAC26312.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 2.2
(-3)
A 		4.9
(-2.3)
A 		6.4
(-1.9)
A 		24.5
(3)
A 		22
B 17
(3)
A 		5.8
(-2.2)
A 		4.1
(-3)
A 		11.7
(0.5)
A 		13
C 1.4
(-3)
A 		19.4
(3)
A 		16.6
(2.1)
A 		12.2
(0.6)
A 		18
avr 6.9
(-3) 		10
(-1) 		9
(-1.6) 		16.1
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 4
(-2.9)
A 		11.1
(-1.2)
A 		28.2
(3)
A 		13.4
(-0.6)
A 		7.4
(-2.1)
A 		3.5
(-3)
A 		25
B 2.2
(-2.7)
A 		23.5
(3)
A 		4
(-2.2)
A 		8.4
(-1.1)
A 		1.2
(-3)
A 		1.9
(-2.8)
A 		22
C 1.6
(-3)
A 		6.8
(-1.9)
A 		4.8
(-2.3)
A 		29.1
(3)
A 		19.6
(0.9)
A 		4
(-2.5)
A 		28
avr 2.6
(-3) 		13.8
(1.7) 		12.3
(1) 		17
(3) 		9.4
(-0.2) 		3.1
(-2.8) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.8
(-3)
A 		1.1
(-2.4)
A 		1.7
(-1.1)
A 		3.6
(3)
A 		3
B 5.4
(3)
A 		1.4
(-2.5)
A 		1
(-3)
A 		2.5
(-1)
A 		4
C 0.5
(-3)
A 		5.6
(2.8)
A 		5.8
(3)
A 		2.1
(-1.2)
A 		5
avr 2.2
(-3) 		2.7
(2) 		2.8
(3) 		2.7
(2) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.7
(-3)
A 		4
(0.7)
A 		6.1
(3)
A 		3.4
(0)
A 		2.2
(-1.3)
A 		0.9
(-2.8)
A 		5
B 0.8
(-2.8)
A 		7.8
(3)
A 		1
(-2.6)
A 		2.2
(-1.6)
A 		0.5
(-3)
A 		0.7
(-2.8)
A 		7
C 0.6
(-3)
A 		2.1
(-1.4)
A 		1.2
(-2.4)
A 		5.8
(2.5)
A 		6.3
(3)
A 		1.3
(-2.3)
A 		6
avr 0.7
(-3) 		4.6
(3) 		2.8
(0.2) 		3.8
(1.8) 		3
(0.5) 		1
(-2.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181449_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4947
Sequence Type Exemplar sequence
Representative Public ID T07H3.4 NCBI
Target Description T07H3.4 /REP_DB=WormBase Gene ID /WP=CE19565 /TR=O76608 /GB=AAC26312.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061601
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T07H3.4 ENSEMBL cdna:known chromosome:CEL140:II:1580782:1584245:-1 gene:T07H3.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009948 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1580780-1584244(-) 100.0 100.0
Public Domain and Genome References
Ensembl T07H3.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T33375 hypothetical protein T07H3.4 - Caenorhabditis elegans 0.0
blast NP_494002 C-type LECtin family member (clec-21) [Caenorhabditis elegans] gb|AAC26312.2| Hypothetical protein T07H3.4 [Caenorhabditis elegans] 0.0
blast NP_494003 C-type LECtin family member (clec-20) [Caenorhabditis elegans] gb|AAC26308.1| Hypothetical protein T07H3.5 [Caenorhabditis elegans] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 4.9E-7
Pfam IPR001304 EMBL-EBI C-type lectin 9.9E-9
Pfam IPR000859 EMBL-EBI CUB 2.4E-5
Pfam IPR000859 EMBL-EBI CUB 1.8E-13
Pfam IPR000859 EMBL-EBI CUB 1.2E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
T07H3.4 1 531-553
Sequence
Target Sequence 
>C. ELEGANS:181449_AT
cgaaaagtatctttatccctcaccattgaaaaaaatcaattcaatgacttacataattgt
aaatcactcactgatcttactatttgtgtttattttcttggcttctgcctcaaaagagcc
tatatgtactcatgggtataaattagttaagaatagatgtttgaagctgttttccgagcc
atcaaattacaaaaatgctcagcgacagtgtgtccaaaacggaggaacgctggtgactat
aagaagcgaggaatattgtgaatatcgaatgcacactccgggtttctacagtatactgct
aacattcacgacctttgacattgacccaaaaagtgacgaggtaaaagtctatgatggaga
tttggatgaaaaccgcttaatcggaacattcaaaggacacaacagtgatgagttctctgt
ggcatcaagtggaagcgcaatgttggtgacattcaggtcgaatggcaccgggaaagggaa
cggatttgaagcccgattcgagaagattccctctcagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAAAAGTATCTTTATCCCTCACCA 351 253 1560 Antisense
ATCACTCACTGATCTTACTATTTGT 107 29 1622 Antisense
TTGTGTTTATTTTCTTGGCTTCTGC 583 707 1643 Antisense
AAAATGCTCAGCGACAGTGTGTCCA 369 133 1751 Antisense
AAACGGAGGAACGCTGGTGACTATA 256 111 1776 Antisense
AATATCGAATGCACACTCCGGGTTT 612 173 1820 Antisense
GTATACTGCTAACATTCACGACCTT 505 453 1850 Antisense
TTCACGACCTTTGACATTGACCCAA 525 685 1864 Antisense
ATGAGTTCTCTGTGGCATCAAGTGG 369 45 1967 Antisense
GGAACGGATTTGAAGCCCGATTCGA 272 529 2036 Antisense
GATTCGAGAAGATTCCCTCTCAGAA 280 433 2054 Antisense
Sequence Source Affymetrix Proprietary Database