[Home] | [Total List]

[181448_at]

Description F49H6.10 /REP_DB=WormBase Gene ID /WP=CE18719 /TR=Q9XV01 /GB=CAB04443.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 10      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 5.2
(-1)
A 		4.7
(-1.4)
A 		2.9
(-3)
A 		9.7
(3)
A 		7
B 1.1
(-3)
A 		4.7
(0.3)
A 		4.1
(-0.3)
A 		7.7
(3)
A 		7
C 4.7
(-2.9)
A 		10.5
(-2.4)
A 		4.1
(-3)
A 		70.3
(3)
A 		66
avr 3.7
(-3) 		6.6
(-2.3) 		3.7
(-3) 		29.2
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 3.3
(-2.7)
A 		16.6
(0.6)
A 		26.7
(3)
A 		2.3
(-2.9)
A 		2.7
(-2.8)
A 		1.9
(-3)
A 		25
B 16.2
(1.6)
A 		20.4
(3)
A 		4.6
(-2.2)
A 		2.2
(-3)
A 		17.3
(2)
A 		2.2
(-3)
A 		18
C 1.9
(-2.9)
A 		30.2
(3)
A 		2.1
(-2.8)
A 		2.5
(-2.8)
A 		2.3
(-2.8)
A 		1.3
(-3)
A 		29
avr 7.1
(-1.5) 		22.4
(3) 		11.1
(-0.3) 		2.3
(-2.9) 		7.4
(-1.4) 		1.8
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.9
(3)
A 		1
(-1.9)
A 		0.8
(-3)
A 		1.4
(0.3)
A 		1
B 0.3
(-3)
A 		1.2
(1.2)
A 		1
(0.2)
A 		1.6
(3)
A 		1
C 1.6
(-2.9)
A 		3
(-2.1)
A 		1.4
(-3)
A 		11.9
(3)
A 		11
avr 1.3
(-2.7) 		1.7
(-2.1) 		1.1
(-3) 		5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.6
(-2.9)
A 		5.9
(3)
A 		5.8
(2.9)
A 		0.6
(-2.9)
A 		0.8
(-2.7)
A 		0.5
(-3)
A 		5
B 5.6
(1.7)
A 		6.8
(2.8)
A 		1.1
(-2.5)
A 		0.6
(-3)
A 		7
(3)
A 		0.8
(-2.8)
A 		6
C 0.7
(-2.8)
A 		9.2
(3)
A 		0.5
(-2.9)
A 		0.5
(-2.9)
A 		0.7
(-2.8)
A 		0.4
(-3)
A 		9
avr 2.3
(-1.5) 		7.3
(3) 		2.5
(-1.3) 		0.6
(-3) 		2.8
(-1) 		0.6
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181448_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13535
Sequence Type Exemplar sequence
Representative Public ID F49H6.10 NCBI
Target Description F49H6.10 /REP_DB=WormBase Gene ID /WP=CE18719 /TR=Q9XV01 /GB=CAB04443.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F49H6.10 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17038988:17040440:-1 gene:F49H6.10 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17038987-17040440(-) 100.0 100.0
Public Domain and Genome References
Ensembl F49H6.10
Sequence
Target Sequence 
>C. ELEGANS:181448_AT
gttccattttttattgctttctctggcaattatgagctatcttaaataccaatttccata
cgatttcttatattcacaaaattatacaagcaagtatgtaagaaaattgaacgtgttttt
tgccttaaaggacttcgttcgtggtgttattcattattgtgaacgtggtaatctgcttcc
taccccattcatatacattccaattatagttggtatgaggaaaaaccgacatctacattc
ccaacaacacatttacattcacgaatacatgtttatccagagtattatggttttattgtt
gaaaatagtttgtttttacgcttctatcattggagtgtcaaaatttgtttttcagatcac
tgtaccggtttatgtatactttttcaatgctgatatcacatttggatggccatttagcat
gattattactgatgttatcacaacgccttggataattcagctgtcgtatttgagatgcaa
tttgaacgagctgtatactttatttacgtcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCATTTTTTATTGCTTTCTCTG 393 441 369 Antisense
TTGCCTTAAAGGACTTCGTTCGTGG 632 69 488 Antisense
GACTTCGTTCGTGGTGTTATTCATT 315 371 499 Antisense
GAACGTGGTAATCTGCTTCCTACCC 137 347 529 Antisense
AGTTTGTTTTTACGCTTCTATCATT 382 63 675 Antisense
TACGCTTCTATCATTGGAGTGTCAA 206 649 685 Antisense
TTCAGATCACTGTACCGGTTTATGT 189 687 719 Antisense
GCTGATATCACATTTGGATGGCCAT 527 295 757 Antisense
ACTGATGTTATCACAACGCCTTGGA 592 97 796 Antisense
AACGCCTTGGATAATTCAGCTGTCG 685 145 810 Antisense
GAGCTGTATACTTTATTTACGTCAT 507 387 856 Antisense
Sequence Source Affymetrix Proprietary Database