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[181447_at]

Description T07H3.3 /REP_DB=WormBase Gene ID /WP=CE19564 /TR=O76607 /GB=AAC26311.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 59      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 31.7
(0.9)
A 		15.1
(-1.7)
A 		45.1
(3)
A 		7
(-3)
A 		38
B 31.5
(-1.3)
A 		89.6
(3)
A 		32.2
(-1.2)
A 		7.9
(-3)
A 		82
C 62.1
(1.9)
A 		55.8
(0.7)
A 		67.9
(3)
A 		36.7
(-3)
A 		31
avr 41.8
(1.1) 		53.5
(3) 		48.4
(2.2) 		17.2
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 55.5
(-3)
A 		170
(0)
P 		282.8
(3)
P 		215.7
(1.2)
P 		142.2
(-0.7)
M 		99.4
(-1.8)
A 		227
B 56.2
(-3)
A 		114.4
(-1.2)
P 		254.9
(3)
P 		190.1
(1)
P 		114.7
(-1.2)
P 		95.3
(-1.8)
A 		199
C 61.3
(-3)
A 		143.6
(0.4)
P 		206.9
(3)
P 		204.8
(2.9)
P 		176.6
(1.8)
P 		86.8
(-1.9)
P 		146
avr 57.7
(-3) 		142.7
(-0.3) 		248.2
(3) 		203.5
(1.6) 		144.5
(-0.3) 		93.8
(-1.9) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 11.5
(2.8)
A 		3.3
(-1.7)
A 		11.8
(3)
A 		1
(-3)
A 		11
B 10
(-0.6)
A 		22.1
(3)
A 		7.5
(-1.3)
A 		1.7
(-3)
A 		20
C 20.6
(1.9)
A 		16
(0.4)
A 		23.7
(3)
A 		6.2
(-3)
A 		18
avr 14
(2.8) 		13.8
(2.7) 		14.3
(3) 		3
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 10.2
(-3)
A 		60.5
(2.9)
P 		61.6
(3)
P 		54.7
(2.2)
P 		42.9
(0.8)
M 		24.2
(-1.4)
A 		51
B 19.5
(-3)
A 		38.1
(-0.4)
P 		61.9
(3)
P 		50.4
(1.4)
P 		46.6
(0.8)
P 		35.5
(-0.7)
A 		42
C 22.7
(-3)
A 		43.8
(0.7)
P 		52.7
(2.2)
P 		41.2
(0.2)
P 		57.1
(3)
P 		29.1
(-1.9)
P 		34
avr 17.5
(-3) 		47.5
(1.4) 		58.7
(3) 		48.8
(1.6) 		48.9
(1.6) 		29.6
(-1.2) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181447_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4368
Sequence Type Exemplar sequence
Representative Public ID T07H3.3 NCBI
Target Description T07H3.3 /REP_DB=WormBase Gene ID /WP=CE19564 /TR=O76607 /GB=AAC26311.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061600(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061600 NCBI Caenorhabditis elegans T07H3.3 (T07H3.3) mRNA, complete cds. 11/11 None
GENEFINDER00000009960 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1577484:1579977:-1 11/11 None
T07H3.3 ENSEMBL cdna:known chromosome:CEL140:II:1577507:1579977:-1 gene:T07H3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009947 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1577482-1579976(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07H3.3
Entrez Gene 188249 Entrez gene
SwissProt O76607 EMBL-EBI
WormBase CE36015 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494001 T07H3.3 [Caenorhabditis elegans] gb|AAC26311.2| Hypothetical protein T07H3.3 [Caenorhabditis elegans] 0.0
blast B88035 protein M01D1.2 [imported] - Caenorhabditis elegans 1.0E-58
blast B88035 protein M01D1.2 [imported] - Caenorhabditis elegans 2.0E-58
blast AAB70998 Hypothetical protein M01D1.2 [Caenorhabditis elegans] ref|NP_493891.3| M01D1.2 [Caenorhabditis elegans] 3.0E-20
blast AAB70998 Hypothetical protein M01D1.2 [Caenorhabditis elegans] ref|NP_493891.3| M01D1.2 [Caenorhabditis elegans] 7.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.4E-5
Pfam IPR002083 EMBL-EBI MATH 8.6E-22
Sequence
Target Sequence 
>C. ELEGANS:181447_AT
aggacgcatgctttgatttgatcagctccgagacgtataactgccaaggaaagtttattc
tagagtggagatccatcggtgacttcttgaacaatgggaagatgcgggttgaagccaagg
tgaacgtcttggagaatgttggggtgaataatgtaaagttcgcggaggatgtgaagaccc
agccgataagggttgagaggagcagagctagggaagattatttcgactttatcaagaagg
aagtggatcaggaaatggaaacggtgaaggagatggcgagaaaggttaaattgtctaatg
caaagctggaagagtcattgaagagtcattcaaatgcagatgaagccgacctgatgaaat
tcctggagatccgccacgataaagcagttcttactgttttggacaagtgtgagacgtttt
taatgctgaaatccggaaagtctataagcgagattctgaaaatcgctatgaaatttgaca
tggagagcctaaaaaaccactgcttatcaaaaatcacgaccgttgagcaaatcgacaagg
ttatcggggacttgaagctcagcggactggacagatccttgacggaagcgttgatggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGACGCATGCTTTGATTTGATCAG 1 55 653 Antisense
AGCTCCGAGACGTATAACTGCCAAG 256 81 676 Antisense
GATCCATCGGTGACTTCTTGAACAA 546 415 722 Antisense
AGGATGTGAAGACCCAGCCGATAAG 350 57 818 Antisense
GAAGCCGACCTGATGAAATTCCTGG 588 343 994 Antisense
TGAAATTCCTGGAGATCCGCCACGA 189 573 1007 Antisense
GATCCGCCACGATAAAGCAGTTCTT 426 415 1020 Antisense
GAGCCTAAAAAACCACTGCTTATCA 26 385 1137 Antisense
ATCGGGGACTTGAAGCTCAGCGGAC 119 35 1195 Antisense
TCAGCGGACTGGACAGATCCTTGAC 421 623 1211 Antisense
GATCCTTGACGGAAGCGTTGATGGC 678 415 1226 Antisense
Sequence Source Affymetrix Proprietary Database