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[181446_s_at]

Description C07E3.1A /REP_DB=WormBase Gene ID /WP=CE02118 /TR=Q17784 /GB=CAA90093.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 91      6grp_total > 67      4grp_total > 14      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 317.8
(3)
P 		126.8
(-2.6)
P 		111.6
(-3)
P 		317.1
(3)
P 		206
B 181.3
(-1.3)
P 		179.3
(-1.4)
P 		145.9
(-3)
P 		273.2
(3)
P 		127
C 264.8
(1.9)
P 		192.6
(-3)
P 		204.3
(-2.2)
P 		281.3
(3)
P 		89
avr 254.6
(1.4) 		166.2
(-2.5) 		153.9
(-3) 		290.5
(3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 205.1
(-2.5)
P 		217.6
(-0.8)
P 		244.7
(3)
P 		235.5
(1.7)
P 		201.4
(-3)
P 		240.6
(2.4)
P 		43
B 197
(-2.2)
P 		173.2
(-3)
P 		255.6
(-0.3)
P 		196.2
(-2.2)
P 		192.9
(-2.3)
P 		354.8
(3)
P 		182
C 216.8
(-2)
P 		210.2
(-2.2)
P 		179
(-3)
P 		187.6
(-2.8)
P 		194.7
(-2.6)
P 		405.8
(3)
P 		227
avr 206.3
(-2.6) 		200.3
(-2.8) 		226.4
(-1.7) 		206.4
(-2.6) 		196.3
(-3) 		333.7
(3) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 115.7
(3)
P 		27.5
(-3)
P 		29.2
(-2.9)
P 		46.4
(-1.7)
P 		88
B 57.8
(2.9)
P 		44.3
(-0.4)
P 		33.8
(-3)
P 		58.2
(3)
P 		24
C 87.6
(3)
P 		55.4
(-1.8)
P 		71.2
(0.6)
P 		47.4
(-3)
P 		40
avr 87
(3) 		42.4
(-3) 		44.7
(-2.7) 		50.7
(-1.9) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 37.8
(-3)
P 		77.4
(3)
P 		53.3
(-0.7)
P 		59.7
(0.3)
P 		60.8
(0.5)
P 		58.6
(0.2)
P 		40
B 68.5
(-1.8)
P 		57.6
(-2.6)
P 		62.1
(-2.2)
P 		52
(-3)
P 		78.4
(-1)
P 		132.3
(3)
P 		80
C 80.3
(-0.4)
P 		64.1
(-1.4)
P 		45.6
(-2.5)
P 		37.7
(-3)
P 		63
(-1.5)
P 		135.8
(3)
P 		98
avr 62.2
(-1.7) 		66.4
(-1.3) 		53.7
(-2.6) 		49.8
(-3) 		67.4
(-1.2) 		108.9
(3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181446_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2975
Sequence Type Exemplar sequence
Representative Public ID C07E3.1A NCBI
Target Description C07E3.1A /REP_DB=WormBase Gene ID /WP=CE02118 /TR=Q17784 /GB=CAA90093.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063825(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063825 NCBI Caenorhabditis elegans C07E3.1a (C07E3.1) mRNA, complete cds. 11/11 A 
SNAP00000023197 ENSEMBL cdna:SNAP chromosome:CEL140:II:10347053:10349915:-1 11/11 None
GENEFINDER00000023211 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10347053:10349915:-1 11/11 None
C07E3.1a ENSEMBL cdna:known chromosome:CEL140:II:10347007:10349917:-1 gene:C07E3.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174600 2 1 NM_063825 181446_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10347049-10349870(-) 100.0 100.0
Public Domain and Genome References
Ensembl C07E3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90093 Hypothetical protein C07E3.1a [Caenorhabditis elegans] ref|NP_496226.1| C07E3.1a [Caenorhabditis elegans] 0.0
blast CAE59378 Hypothetical protein CBG02731 [Caenorhabditis briggsae] 0.0
blast XP_534724 PREDICTED: similar to Tuftelin-interacting protein 11 isoform 1 [Canis familiaris] 1.0E-121
blast XP_534724 PREDICTED: similar to Tuftelin-interacting protein 11 isoform 1 [Canis familiaris] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR000467 EMBL-EBI D111/G-patch domain 3.1E-20
Pfam IPR000467 EMBL-EBI D111/G-patch domain 3.1E-20
Sequence
Target Sequence 
>C. ELEGANS:181446_S_AT
ggcttgaatttacacatcctgatgcaattgctaatattgttacaaagtatttcttcccga
ggttctacaactgcctctgtctttggctagatagtcctggtgtcgattacaatgaagtga
agcgttggtatggatcctggaaggctcgaattccacaagttcttgttaattatccaactg
taaatgaaaatcttcgtcgctcaatgatcgcaatagggcgatcccttcaaggagagaaag
tcggcggactccaagccactccgattgctccaatggctccaccaccaccaatggcaccac
actttactcaagctgcacctgttcagaaactgtcattaaaagaaattatcgagtacacag
ctggaaagaatggattcacatatcatccacaaaaagatcgatacaaagacggacgacaag
tattttggttcggtgcactttcgatttatctcgattcggaaatggtttatgtgatggatc
caatcgaatttgtatggcgaccttcagggctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTTGAATTTACACATCCTGATGC 269 537 1913 Antisense
ATTTCTTCCCGAGGTTCTACAACTG 647 13 1961 Antisense
TACAACTGCCTCTGTCTTTGGCTAG 372 641 1978 Antisense
TTGGCTAGATAGTCCTGGTGTCGAT 216 709 1995 Antisense
GAAGCGTTGGTATGGATCCTGGAAG 433 339 2031 Antisense
AATCTTCGTCGCTCAATGATCGCAA 219 171 2101 Antisense
GCAATAGGGCGATCCCTTCAAGGAG 30 315 2122 Antisense
AGAGAAAGTCGGCGGACTCCAAGCC 362 67 2145 Antisense
CTTTACTCAAGCTGCACCTGTTCAG 359 223 2214 Antisense
GGTTCGGTGCACTTTCGATTTATCT 371 507 2339 Antisense
TTGTATGGCGACCTTCAGGGCTCAA 306 707 2402 Antisense
Sequence Source Affymetrix Proprietary Database