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[181444_at]

Description C13A2.2 /REP_DB=WormBase Gene ID /WP=CE08114 /TR=O16877 /GB=AAB69874.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 53      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 5.9
(-2.4)
A 		9.8
(3)
A 		5.5
(-3)
A 		5.5
(-3)
A 		4
B 10.8
(3)
A 		3.9
(-2.4)
A 		8.9
(1.5)
A 		3.2
(-3)
A 		8
C 7.6
(3)
A 		5.8
(0.4)
A 		4.8
(-1.1)
A 		3.5
(-3)
A 		4
avr 8.1
(3) 		6.5
(0.6) 		6.4
(0.5) 		4.1
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 7.8
(-2.6)
A 		11.9
(-2.2)
A 		8.5
(-2.5)
A 		64.4
(3)
A 		10.9
(-2.3)
A 		3.9
(-3)
A 		61
B 8
(-2.5)
A 		5.5
(-2.8)
A 		9.8
(-2.4)
A 		70.9
(3)
A 		10
(-2.4)
A 		2.8
(-3)
A 		68
C 5.9
(-2.6)
A 		3.2
(-3)
A 		5.1
(-2.7)
A 		44.2
(3)
A 		28
(0.6)
A 		5.1
(-2.7)
A 		41
avr 7.2
(-2.6) 		6.9
(-2.7) 		7.8
(-2.6) 		59.8
(3) 		16.3
(-1.7) 		3.9
(-3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.2
(3)
A 		2.1
(2.6)
A 		1.4
(-0.4)
A 		0.8
(-3)
A 		1
B 3.4
(3)
A 		1
(-2.3)
A 		2.1
(0.1)
A 		0.7
(-3)
A 		3
C 2.5
(3)
A 		1.7
(0.5)
A 		1.7
(0.5)
A 		0.6
(-3)
A 		2
avr 2.7
(3) 		1.6
(-0.3) 		1.7
(0) 		0.7
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.4
(-2.8)
A 		4.2
(-1.7)
A 		1.9
(-2.6)
A 		16.3
(3)
A 		3.3
(-2.1)
A 		1
(-3)
A 		15
B 2.8
(-2.4)
A 		1.8
(-2.7)
A 		2.4
(-2.5)
A 		18.8
(3)
A 		4.1
(-2)
A 		1
(-3)
A 		18
C 2.2
(-2.1)
A 		1
(-3)
A 		1.3
(-2.8)
A 		8.9
(2.9)
A 		9.1
(3)
A 		1.7
(-2.5)
A 		8
avr 2.1
(-2.6) 		2.3
(-2.5) 		1.9
(-2.7) 		14.7
(3) 		5.5
(-1.1) 		1.2
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181444_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12112
Sequence Type Exemplar sequence
Representative Public ID C13A2.2 NCBI
Target Description C13A2.2 /REP_DB=WormBase Gene ID /WP=CE08114 /TR=O16877 /GB=AAB69874.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072452(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072452 NCBI Caenorhabditis elegans C13A2.2 (C13A2.2) mRNA, complete cds. 11/11 None
C13A2.2 ENSEMBL cdna:known chromosome:CEL140:V:7288778:7289992:1 gene:C13A2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7288778-7289993(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C13A2.2
Entrez Gene 182550 Entrez gene
SwissProt O16877 EMBL-EBI
WormBase CE08114 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69874 Hypothetical protein C13A2.2 [Caenorhabditis elegans] ref|NP_504853.1| C13A2.2 [Caenorhabditis elegans] 1.0E-111
blast AAB65375 Hypothetical protein C05C8.8 [Caenorhabditis elegans] ref|NP_504844.1| C05C8.8 [Caenorhabditis elegans] 4.0E-53
blast AAC69352 Hypothetical protein K08D9.2 [Caenorhabditis elegans] ref|NP_503884.1| K08D9.2 [Caenorhabditis elegans] 2.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.7E-26
Sequence
Target Sequence 
>C. ELEGANS:181444_AT
ttttttgcctaatctatttgtctgcaaaggatcgatttaatccgttcagcagaattatta
ctcttttgcataattattttgacaacttgggccttccgattgagagccctacatgtgacg
ttcccgattggaatagaattactacaaaatcggttcctcatgccgcggatttcaaaaaat
gggcgtctatggggaactatttgcaacacggtgaagcaaggctactatccgcttttgtat
acaaggatcaaatttcgatagtcacaacttccgagaatatcgacagaaagagtgtaaatt
gtcgttactatgattgtaatcggcaagaaatttctaattctgcattcaacacaattgtgg
ctccgatggctgtaattaactgcccgagaaaatttggcgctgtttacatgagtataagtt
tcatggaaggcgacaaaccccatgaaccgattccattgatttatcgaatttacgatgaac
cgatccatgaactgtcagtatgtgtcggaccattatacggtaactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTTGCCTAATCTATTTGTCTGC 471 675 35 Antisense
TATTTTGACAACTTGGGCCTTCCGA 162 661 109 Antisense
CTTCCGATTGAGAGCCCTACATGTG 430 219 127 Antisense
CCTACATGTGACGTTCCCGATTGGA 668 267 142 Antisense
TACAAAATCGGTTCCTCATGCCGCG 195 643 177 Antisense
GGGCGTCTATGGGGAACTATTTGCA 205 493 215 Antisense
AAGGCTACTATCCGCTTTTGTATAC 184 161 252 Antisense
AACACAATTGTGGCTCCGATGGCTG 676 133 382 Antisense
CAAACCCCATGAACCGATTCCATTG 543 191 468 Antisense
GAACCGATCCATGAACTGTCAGTAT 236 347 511 Antisense
GTGTCGGACCATTATACGGTAACTC 314 487 536 Antisense
Sequence Source Affymetrix Proprietary Database