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[181443_at]

Description T02H6.9 /REP_DB=WormBase Gene ID /WP=CE21145 /TR=Q9N5F2 /GB=AAF39967.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 12.8
(-2.8)
A 		16.5
(-2.5)
A 		10
(-3)
A 		86
(3)
A 		76
B 57.9
(3)
A 		22.1
(-1.4)
A 		9
(-3)
A 		22.5
(-1.3)
A 		49
C 6.2
(-3)
A 		12.7
(-2.3)
A 		23.7
(-1.1)
A 		60.7
(3)
A 		55
avr 25.6
(-1.4) 		17.1
(-2.6) 		14.2
(-3) 		56.4
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 24.4
(0.3)
A 		7.2
(-2.6)
A 		4.5
(-3)
A 		18.2
(-0.7)
A 		40.5
(3)
A 		9.7
(-2.1)
A 		36
B 9.3
(-3)
A 		17.3
(3)
A 		10.1
(-2.4)
A 		14.5
(0.9)
A 		14
(0.5)
A 		13.4
(0.1)
A 		8
C 12
(1)
A 		7
(-2.6)
A 		6.4
(-3)
A 		14.9
(3)
A 		6.6
(-2.9)
A 		6.5
(-2.9)
A 		9
avr 15.2
(0.7) 		10.5
(-1.4) 		7
(-3) 		15.9
(1) 		20.4
(3) 		9.9
(-1.7) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 4.7
(-1.7)
A 		3.6
(-2.4)
A 		2.6
(-3)
A 		12.6
(3)
A 		10
B 18.5
(3)
A 		5.5
(-1.8)
A 		2.1
(-3)
A 		4.8
(-2)
A 		16
C 2.1
(-3)
A 		3.7
(-1.8)
A 		8.2
(1.5)
A 		10.2
(3)
A 		8
avr 8.4
(2) 		4.3
(-3) 		4.3
(-3) 		9.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 4.5
(-1.1)
A 		2.6
(-2.1)
A 		1
(-3)
A 		4.6
(-1.1)
A 		12.2
(3)
A 		2.4
(-2.3)
A 		11
B 3.2
(-1.6)
A 		5.8
(3)
A 		2.4
(-3)
A 		3.8
(-0.5)
A 		5.7
(2.8)
A 		5
(1.6)
A 		3
C 4.4
(3)
A 		2.1
(-1.9)
A 		1.6
(-3)
A 		3
(-0)
A 		2.1
(-1.9)
A 		2.2
(-1.7)
A 		3
avr 4
(-0.2) 		3.5
(-0.8) 		1.7
(-3) 		3.8
(-0.5) 		6.7
(3) 		3.2
(-1.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181443_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5665
Sequence Type Exemplar sequence
Representative Public ID T02H6.9 NCBI
Target Description T02H6.9 /REP_DB=WormBase Gene ID /WP=CE21145 /TR=Q9N5F2 /GB=AAF39967.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061386(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061386 NCBI Caenorhabditis elegans T02H6.9 (T02H6.9) mRNA, complete cds. 11/11 None
SNAP00000003361 ENSEMBL cdna:SNAP chromosome:CEL140:II:679031:679681:1 11/11 None
GENEFINDER00000003377 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:679031:684122:1 11/11 None
T02H6.9 ENSEMBL cdna:known chromosome:CEL140:II:679031:679681:1 gene:T02H6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:679030-679681(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02H6.9
Entrez Gene 188008 Entrez gene
SwissProt Q9N5F2 EMBL-EBI
WormBase CE21145 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39967 Hypothetical protein T02H6.9 [Caenorhabditis elegans] ref|NP_493787.1| T02H6.9 [Caenorhabditis elegans] 1.0E-105
blast AAF39967 Hypothetical protein T02H6.9 [Caenorhabditis elegans] ref|NP_493787.1| T02H6.9 [Caenorhabditis elegans] 1.0E-103
blast AAF39966 Hypothetical protein T02H6.7 [Caenorhabditis elegans] ref|NP_493790.1| T02H6.7 [Caenorhabditis elegans] 3.0E-85
blast AAF39961 Hypothetical protein T02H6.4 [Caenorhabditis elegans] ref|NP_493793.1| T02H6.4 [Caenorhabditis elegans] 2.0E-71
blast AAK85474 Hypothetical protein F28A10.8 [Caenorhabditis elegans] ref|NP_493828.1| F28A10.8 [Caenorhabditis elegans] 4.0E-42
blast CAA21683 Hypothetical protein Y54E2A.9 [Caenorhabditis elegans] ref|NP_497065.1| Y54E2A.9 [Caenorhabditis elegans] 3.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 1.9E-110
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 7.0E-110
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 8.2E-25
Sequence
Target Sequence 
>C. ELEGANS:181443_AT
accgaccatcatcagatcgccaaaagtcaccggatggggttggtggagtgaaatggagag
ctgcccacctggctattttgctcacggaatgcgtatcaagtacgaacgtgacagtggttc
tctggatgaaactggtctcaacgcgatcgagctggcttgtaagaatcgtgcggttcccag
cagcggtgacacctacatcaagggcgctgagggagtgtttggagggtggcaagcctacca
gtactgtccacaaggggaatatgtgattggattcgctcttcagtcggaatcatggcgtgg
aggaaacaaggatgatgtagctgccaacaactttgcagcatactgtggaagaccggaggc
accgagacggaggtatagttggattcaaggctcggtgaacgagagaggaagctggacccg
cgatcagttctgcccagctcgacaaatcgtctgtggaatcatagttcaaattgaacccgc
tcaagctccgcatgtggatgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGACCATCATCAGATCGCCAAAA 44 89 66 Antisense
AGTGAAATGGAGAGCTGCCCACCTG 633 59 112 Antisense
CTGGCTATTTTGCTCACGGAATGCG 549 241 134 Antisense
GAAACTGGTCTCAACGCGATCGAGC 676 357 193 Antisense
TGTAAGAATCGTGCGGTTCCCAGCA 300 545 223 Antisense
GCGGTGACACCTACATCAAGGGCGC 302 293 248 Antisense
AGGGTGGCAAGCCTACCAGTACTGT 490 57 288 Antisense
ATGTGATTGGATTCGCTCTTCAGTC 568 49 326 Antisense
AGACCGGAGGCACCGAGACGGAGGT 9 71 415 Antisense
CCCAGCTCGACAAATCGTCTGTGGA 308 259 498 Antisense
CGCTCAAGCTCCGCATGTGGATGAC 517 255 543 Antisense
Sequence Source Affymetrix Proprietary Database