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[181441_s_at]

Description T01D1.3 /REP_DB=WormBase Gene ID /WP=CE12946 /TR=P91415 /GB=AAB37883.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 80      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 54      6grp_total > 81      4grp_total > 60      6grp_highest_sub > 04_05      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1049
1 2 3 4 range
A 978.2
(2.1)
P 		1113.8
(3)
P 		984.8
(2.1)
P 		247
(-3)
P 		867
B 1024.8
(3)
P 		1006.8
(2.9)
P 		996.8
(2.8)
P 		141.9
(-3)
P 		883
C 1190.8
(3)
P 		931.7
(1.4)
P 		1082.5
(2.3)
P 		193.5
(-3)
P 		997
avr 1064.6
(3) 		1017.4
(2.7) 		1021.4
(2.7) 		194.1
(-3) 		871

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 968
1 2 3 4 5 6 range
A 863.4
(-0.7)
P 		1098.6
(0.9)
P 		1212.3
(1.6)
P 		1416.8
(3)
P 		1257.1
(1.9)
P 		512.7
(-3)
P 		904
B 887.5
(-0.6)
P 		1080.6
(0.6)
P 		959
(-0.2)
P 		1441
(3)
P 		1295.5
(2)
P 		525.7
(-3)
P 		915
C 846.8
(-1.4)
P 		1081.6
(0.2)
P 		1209.9
(1.1)
P 		1481
(3)
P 		1411.5
(2.5)
P 		618.4
(-3)
P 		863
avr 865.9
(-0.9) 		1086.9
(0.6) 		1127.1
(0.9) 		1446.3
(3) 		1321.4
(2.2) 		552.3
(-3) 		894
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 364
1 2 3 4 range
A 356.2
(3)
P 		241.8
(0.9)
P 		257.4
(1.1)
P 		36.2
(-3)
P 		320
B 326.8
(3)
P 		248.7
(1.4)
P 		231
(1.1)
P 		30.2
(-3)
P 		297
C 394.2
(3)
P 		267.9
(0.9)
P 		377.3
(2.7)
P 		32.6
(-3)
P 		362
avr 359.1
(3) 		252.8
(1) 		288.6
(1.7) 		33
(-3) 		326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 402
1 2 3 4 5 6 range
A 159.2
(-2.2)
P 		390.7
(3)
P 		264
(0.1)
P 		359.3
(2.3)
P 		379.3
(2.7)
P 		124.8
(-3)
P 		266
B 308.8
(-1)
P 		359.7
(-0)
P 		232.9
(-2.3)
P 		381.7
(0.4)
P 		526.3
(3)
P 		196
(-3)
P 		330
C 313.9
(-0.4)
P 		330
(-0)
P 		308
(-0.6)
P 		297.8
(-0.8)
P 		456.7
(3)
P 		207
(-3)
P 		250
avr 260.6
(-1.2) 		360.1
(1) 		268.3
(-1) 		346.3
(0.7) 		454.1
(3) 		175.9
(-3) 		278
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181441_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4331
Sequence Type Exemplar sequence
Representative Public ID T01D1.3 NCBI
Target Description T01D1.3 /REP_DB=WormBase Gene ID /WP=CE12946 /TR=P91415 /GB=AAB37883.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061274(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061274 NCBI Caenorhabditis elegans T01D1.3 (T01D1.3) mRNA, complete cds. 11/11 None
SNAP00000043214 ENSEMBL cdna:SNAP chromosome:CEL140:II:174541:175638:-1 11/11 None
GENEFINDER00000043220 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:174541:175638:-1 11/11 None
T01D1.3 ENSEMBL cdna:known chromosome:CEL140:II:174469:175642:-1 gene:T01D1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:174540-175638(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01D1.3
Entrez Gene 173402 Entrez gene
SwissProt P91415 EMBL-EBI
WormBase CE12946 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37883 Hypothetical protein T01D1.3 [Caenorhabditis elegans] ref|NP_493675.1| T01D1.3 [Caenorhabditis elegans] 1.0E-128
blast CAE62797 Hypothetical protein CBG06971 [Caenorhabditis briggsae] 1.0E-100
blast CAE17881 Hypothetical protein K10H10.10 [Caenorhabditis elegans] ref|NP_001022249.1| K10H10.10 [Caenorhabditis elegans] 4.0E-12
Sequence
Target Sequence 
>C. ELEGANS:181441_S_AT
gtgagggtttgcacaggagccaacacaaaacgacgagagcaaaaagacaaggacttttgc
aatgccttcgaaaatatttgtttttcgattccggaaggtgaacctgacaaggcgaaagat
gcagaggttactgggcctcgtaccgccgcaatctcacccgagtcagcagcagcggtgaga
ggggagactactggttctgcacacaaaaagacgaattttgcacggttctgcaaggaattc
aaaaatcaatacctttatgtttgtccggatccgttcaggtttggtcaaaaagccattgtc
ttctgtccagtctactctgaaaagtgtcacgtgccgcttcccgacaagccagtgatcccg
caacgaaaatcacaccgtaaacgtggcccgggcggtgctgtcaatcaactttgtcgtagc
tatcaaggatttgcaatgaattactgtaacaatcctatattaaccgctcaaagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGGGTTTGCACAGGAGCCAACA 484 483 127 Antisense
AGGACTTTTGCAATGCCTTCGAAAA 484 53 176 Antisense
TGCAGAGGTTACTGGGCCTCGTACC 111 561 246 Antisense
CACCCGAGTCAGCAGCAGCGGTGAG 200 201 281 Antisense
AGAGGGGAGACTACTGGTTCTGCAC 271 69 304 Antisense
ATACCTTTATGTTTGTCCGGATCCG 685 21 375 Antisense
TCCGGATCCGTTCAGGTTTGGTCAA 176 593 390 Antisense
TCTTCTGTCCAGTCTACTCTGAAAA 571 617 425 Antisense
TCTGAAAAGTGTCACGTGCCGCTTC 703 603 442 Antisense
AAGCCAGTGATCCCGCAACGAAAAT 456 149 472 Antisense
AATCCTATATTAACCGCTCAAAGCC 425 167 577 Antisense
Sequence Source Affymetrix Proprietary Database