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[181440_at]

Description D1014.5 /REP_DB=WormBase Gene ID /WP=CE07007 /TR=Q18918 /GB=AAA96284.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      4grp_high_8_8 > 46      6grp_highest_nonorm > 54      6grp_total > 81      4grp_total > 49      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1121
1 2 3 4 range
A 69.9
(-3)
P 		981.6
(3)
P 		934.7
(2.7)
P 		210.3
(-2.1)
P 		912
B 97.1
(-2.8)
P 		989.3
(3)
P 		863.5
(2.2)
P 		71.7
(-3)
A 		918
C 71.8
(-3)
P 		838.8
(1.1)
P 		1191.3
(3)
P 		220.5
(-2.2)
P 		1120
avr 79.6
(-3) 		936.6
(2.6) 		996.5
(3) 		167.5
(-2.4) 		917

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2806
1 2 3 4 5 6 range
A 160.7
(-3)
P 		695
(-1.6)
P 		965.4
(-0.9)
P 		2429.2
(3)
P 		1346.9
(0.1)
P 		225.4
(-2.8)
P 		2269
B 197.6
(-3)
P 		830.8
(-1.4)
P 		911.4
(-1.2)
P 		2541
(3)
P 		1512.1
(0.4)
P 		296.1
(-2.7)
P 		2343
C 135
(-3)
P 		791.5
(-1.6)
P 		760.9
(-1.7)
P 		2940.9
(3)
P 		1094.2
(-0.9)
P 		300.3
(-2.6)
P 		2806
avr 164.4
(-3) 		772.4
(-1.5) 		879.2
(-1.3) 		2637
(3) 		1317.7
(-0.2) 		273.9
(-2.7) 		2473
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 400
1 2 3 4 range
A 25.4
(-3)
P 		213.1
(2.1)
P 		244.3
(3)
P 		30.8
(-2.9)
P 		219
B 31
(-2.6)
P 		244.3
(3)
P 		200.1
(1.8)
P 		15.3
(-3)
A 		229
C 23.8
(-3)
P 		241.1
(0.3)
P 		415.2
(3)
P 		37.2
(-2.8)
P 		391
avr 26.7
(-3) 		232.8
(1.8) 		286.5
(3) 		27.8
(-3) 		260

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 643
1 2 3 4 5 6 range
A 29.6
(-3)
P 		247.2
(-0.8)
P 		210.2
(-1.2)
P 		616.1
(3)
P 		406.4
(0.9)
P 		54.9
(-2.7)
P 		587
B 68.8
(-3)
P 		276.5
(-0.9)
P 		221.3
(-1.5)
P 		673
(3)
P 		614.3
(2.4)
P 		110.4
(-2.6)
P 		604
C 50
(-3)
P 		241.5
(-0.9)
P 		193.7
(-1.4)
P 		591.4
(3)
P 		354.1
(0.4)
P 		100.5
(-2.4)
P 		541
avr 49.5
(-3) 		255.1
(-0.9) 		208.4
(-1.3) 		626.8
(3) 		458.3
(1.2) 		88.6
(-2.6) 		577
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181440_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12100
Sequence Type Exemplar sequence
Representative Public ID D1014.5 NCBI
Target Description D1014.5 /REP_DB=WormBase Gene ID /WP=CE07007 /TR=Q18918 /GB=AAA96284.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072696(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072696 NCBI Caenorhabditis elegans D1014.5 (D1014.5) mRNA, complete cds. 11/11 None
SNAP00000031798 ENSEMBL cdna:SNAP chromosome:CEL140:V:8126288:8129213:1 11/11 None
GENEFINDER00000031807 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8120867:8129213:1 11/11 None
D1014.5 ENSEMBL cdna:known chromosome:CEL140:V:8126275:8129282:1 gene:D1014.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8126288-8129214(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1014.5
Entrez Gene 179191 Entrez gene
SwissProt Q18918 EMBL-EBI
WormBase CE07007 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505097 D1014.5 [Caenorhabditis elegans] gb|AAA96284.1| Hypothetical protein D1014.5 [Caenorhabditis elegans] 0.0
blast NP_505096 D1014.6 [Caenorhabditis elegans] gb|AAK68284.1| Hypothetical protein D1014.6 [Caenorhabditis elegans] 0.0
blast NP_505095 D1014.7 [Caenorhabditis elegans] gb|AAK68285.1| Hypothetical protein D1014.7 [Caenorhabditis elegans] 0.0
blast CAE66127 Hypothetical protein CBG11351 [Caenorhabditis briggsae] 1.0E-66
blast AAB94266 Hypothetical protein C14C6.8 [Caenorhabditis elegans] ref|NP_503243.2| C14C6.8 [Caenorhabditis elegans] 2.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 5.7E-80
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.1E-77
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505097.1 1 22-41
D1014.5 1 22-41
SNAP00000031798 1 22-41
GENEFINDER00000031807 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:181440_AT
actacaaggagccactttctttaatgtgtattataaaaatatgagtaaatatcagactat
gttactggaggattatacaaaaactggagatgttaaacttgtgaaagttggaagtgaatc
gacagaacaaattgaagcaaatgattgccaacaccgaagcaaatatttctcaaaatggac
tgcatttttggcgctcaatgatcgcctggaagttggagatggtgcaaaggaaggtactac
aattgcttctaagatagattctgttgtggatttcaagttgaatgttttaaagtacacatc
tccggagactgatgagaaaattagaattgttgttcgtccagataaaattgtatccataaa
ccaacatccaattttggtgtattctgatgatcaaccccaggaggcaattgcagaatcttc
tggacttttgaaagaatttataaactccgacgacaaatggacaccagaaaacctatccga
gaatatcgaagataatgttccgctccgaggtgaacttctggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTACAAGGAGCCACTTTCTTTAAT 578 99 1608 Antisense
TGGACTGCATTTTTGGCGCTCAATG 153 549 1783 Antisense
CGCTCAATGATCGCCTGGAAGTTGG 105 255 1799 Antisense
TTAAAGTACACATCTCCGGAGACTG 594 681 1894 Antisense
GTATCCATAAACCAACATCCAATTT 668 453 1957 Antisense
GGTGTATTCTGATGATCAACCCCAG 533 499 1983 Antisense
GATCAACCCCAGGAGGCAATTGCAG 673 421 1996 Antisense
AACTCCGACGACAAATGGACACCAG 181 137 2050 Antisense
GACACCAGAAAACCTATCCGAGAAT 566 365 2067 Antisense
ATCGAAGATAATGTTCCGCTCCGAG 148 37 2092 Antisense
TCCGCTCCGAGGTGAACTTCTGGAA 292 595 2106 Antisense
Sequence Source Affymetrix Proprietary Database