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[181438_at]

Description C13A2.3 /REP_DB=WormBase Gene ID /WP=CE08115 /TR=O16876 /GB=AAB69875.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 82      4grp_high_8_8 > 38      6grp_total > 81      4grp_total > 34      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 69.6
(-0.6)
P 		101.1
(3)
P 		48.8
(-3)
A 		92
(2)
P 		52
B 34.9
(-3)
A 		70.6
(2.2)
P 		76.3
(3)
P 		57.1
(0.2)
P 		41
C 54.5
(-3)
P 		86.8
(3)
P 		84.4
(2.6)
P 		71
(0.1)
P 		32
avr 53
(-3) 		86.2
(3) 		69.8
(0) 		73.4
(0.7) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1358
1 2 3 4 5 6 range
A 63.9
(-3)
P 		119.2
(-2.8)
P 		501
(-1)
P 		1399.4
(3)
P 		789.9
(0.3)
P 		156.8
(-2.6)
P 		1336
B 41.4
(-3)
A 		135.5
(-2.5)
P 		393.8
(-1.2)
P 		1224.4
(3)
P 		918.7
(1.4)
P 		177.3
(-2.3)
P 		1183
C 52
(-3)
A 		165.8
(-2.5)
P 		351.2
(-1.6)
P 		1366.5
(3)
P 		695.7
(-0.1)
P 		191.8
(-2.4)
P 		1315
avr 52.4
(-3) 		140.2
(-2.6) 		415.3
(-1.3) 		1330.1
(3) 		801.4
(0.5) 		175.3
(-2.4) 		1278
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 25.3
(3)
P 		22
(1.4)
P 		12.8
(-3)
A 		13.5
(-2.7)
P 		13
B 11.1
(-3)
A 		17.4
(2.7)
P 		17.7
(3)
P 		12.2
(-2)
P 		7
C 18
(-0.9)
P 		24.9
(1.4)
P 		29.4
(3)
P 		12
(-3)
P 		17
avr 18.1
(0.8) 		21.4
(3) 		20
(2) 		12.6
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 361
1 2 3 4 5 6 range
A 11.8
(-3)
P 		42.4
(-2.5)
P 		109.1
(-1.3)
P 		354.9
(3)
P 		238.4
(1)
P 		38.2
(-2.5)
P 		343
B 14.4
(-3)
A 		45.1
(-2.5)
P 		95.6
(-1.6)
P 		324.3
(2.2)
P 		373.2
(3)
P 		66.1
(-2.1)
P 		359
C 19.3
(-3)
A 		50.6
(-2.3)
P 		89.4
(-1.4)
P 		274.8
(3)
P 		225.1
(1.8)
P 		64.2
(-1.9)
P 		256
avr 15.2
(-3) 		46
(-2.4) 		98
(-1.4) 		318
(3) 		278.9
(2.2) 		56.2
(-2.2) 		303
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181438_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11989
Sequence Type Exemplar sequence
Representative Public ID C13A2.3 NCBI
Target Description C13A2.3 /REP_DB=WormBase Gene ID /WP=CE08115 /TR=O16876 /GB=AAB69875.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072451(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072451 NCBI Caenorhabditis elegans C13A2.3 (C13A2.3) mRNA, complete cds. 9/11 None
SNAP00000044273 ENSEMBL cdna:SNAP chromosome:CEL140:V:7286009:7287260:1 9/11 None
GENEFINDER00000044281 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7286009:7287260:1 9/11 None
C13A2.3 ENSEMBL cdna:known chromosome:CEL140:V:7285997:7287260:1 gene:C13A2.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7285997-7287261(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C13A2.3
Entrez Gene 182551 Entrez gene
SwissProt O16876 EMBL-EBI
WormBase CE35232 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69875 Hypothetical protein C13A2.3 [Caenorhabditis elegans] ref|NP_504852.2| C13A2.3 [Caenorhabditis elegans] 1.0E-87
blast AAB69875 Hypothetical protein C13A2.3 [Caenorhabditis elegans] ref|NP_504852.2| C13A2.3 [Caenorhabditis elegans] 1.0E-85
blast AAB70361 Hypothetical protein K06H6.1 [Caenorhabditis elegans] ref|NP_503255.1| K06H6.1 [Caenorhabditis elegans] 5.0E-44
blast CAE74292 Hypothetical protein CBG21994 [Caenorhabditis briggsae] 7.0E-44
blast AAB70361 Hypothetical protein K06H6.1 [Caenorhabditis elegans] ref|NP_503255.1| K06H6.1 [Caenorhabditis elegans] 2.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 1.0E-126
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:181438_AT
ggctatcctcaatgcatcctatggaatttgcaaacaaatggggacttattttctcggtac
tgttgtttcctcaattttttcacctaaaaaaattaagtaagaatcgaaatgtcaacaatt
tattgagtattagacagtacgctgaaacatttgatttcgtcgccacatttggatttattg
agagatctggcctgggtcgatatcgtgaaccaatggatcccattggagatttacgcgaaa
ttatgaaaataaaatgtgttttgaagcaaggaggtctcttgtacctgggtctcccatatg
gtaccgacgctcttcaatttcaatctcaaagaatatatggctcgcttcgtcttgcgatga
tgttcagcggttttgaatgggttgcaactttcaccggaagatctccaaagcgtgtgcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTATCCTCAATGCATCCTATGGA 143 537 173 Antisense
ATGGGGACTTATTTTCTCGGTACTG 434 49 210 Antisense
TTTCTCGGTACTGTTGTTTCCTCAA 622 671 222 Antisense
AACATTTGATTTCGTCGCCACATTT 604 137 318 Antisense
TGAGAGATCTGGCCTGGGTCGATAT 103 569 351 Antisense
GCAAGGAGGTCTCTTGTACCTGGGT 385 321 438 Antisense
GTACCTGGGTCTCCCATATGGTACC 554 455 453 Antisense
ATATGGTACCGACGCTCTTCAATTT 458 21 468 Antisense
TTCGTCTTGCGATGATGTTCAGCGG 683 693 518 Antisense
GAATGGGTTGCAACTTTCACCGGAA 297 333 547 Antisense
GGAAGATCTCCAAAGCGTGTGCAAT 2 533 568 Antisense
Sequence Source Affymetrix Proprietary Database