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[181437_at]

Description C25A1.15 /REP_DB=WormBase Gene ID /WP=CE08381 /TR=Q9XVR9 /GB=CAB02760.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 11.2
(-3)
A 		42
(3)
A 		36.6
(1.9)
A 		12.1
(-2.8)
A 		31
B 17.7
(-3)
A 		45.8
(3)
A 		22.7
(-1.9)
A 		31
(-0.2)
A 		28
C 13.3
(-3)
A 		15.9
(-2.8)
A 		30.3
(-1.9)
A 		104.2
(3)
P 		91
avr 14.1
(-3) 		34.6
(0.5) 		29.9
(-0.3) 		49.1
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 22.3
(-2.3)
A 		34.7
(-1.4)
A 		17
(-2.7)
A 		32.2
(-1.6)
A 		13.2
(-3)
A 		92.2
(3)
A 		79
B 25.3
(-0.9)
A 		31.3
(-0.3)
A 		62.1
(3)
A 		5.9
(-3)
A 		26.9
(-0.8)
A 		23.5
(-1.1)
A 		56
C 7.6
(-2.9)
A 		11.2
(-2.4)
A 		19.6
(-1.2)
A 		8.9
(-2.7)
A 		6.8
(-3)
A 		50.6
(3)
A 		44
avr 18.4
(-2.6) 		25.7
(-1.5) 		32.9
(-0.4) 		15.7
(-3) 		15.6
(-3) 		55.4
(3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 4.1
(-1.2)
A 		9.1
(2.6)
A 		9.6
(3)
A 		1.8
(-3)
A 		8
B 5.6
(-2.6)
A 		11.3
(3)
A 		5.2
(-3)
A 		6.6
(-1.6)
A 		6
C 4.4
(-3)
A 		4.6
(-2.9)
A 		10.5
(-0.2)
A 		17.6
(3)
P 		13
avr 4.7
(-3) 		8.3
(2.4) 		8.4
(2.6) 		8.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 4.1
(-2.9)
A 		12.3
(-0.2)
A 		3.7
(-3)
A 		8.2
(-1.6)
A 		4
(-2.9)
A 		22.4
(3)
A 		19
B 8.8
(0.2)
A 		10.4
(0.9)
A 		15.1
(3)
A 		1.6
(-3)
A 		10.9
(1.1)
A 		8.8
(0.2)
A 		14
C 2.8
(-2.6)
A 		3.4
(-2.4)
A 		5
(-1.7)
A 		1.8
(-3)
A 		2.2
(-2.8)
A 		16.9
(3)
A 		15
avr 5.2
(-2.4) 		8.7
(-0.6) 		7.9
(-1) 		3.9
(-3) 		5.7
(-2.1) 		16
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181437_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.512
Sequence Type Exemplar sequence
Representative Public ID C25A1.15 NCBI
Target Description C25A1.15 /REP_DB=WormBase Gene ID /WP=CE08381 /TR=Q9XVR9 /GB=CAB02760.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060287(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060287 NCBI Caenorhabditis elegans C25A1.15 (C25A1.15) mRNA, complete cds. 11/11 None
C25A1.15 ENSEMBL cdna:known chromosome:CEL140:I:10205442:10205717:1 gene:C25A1.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10205372-10205648(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C25A1.15
Entrez Gene 182877 Entrez gene
SwissProt Q9XVR9 EMBL-EBI
WormBase CE08381 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02760 Hypothetical protein C25A1.15 [Caenorhabditis elegans] ref|NP_492688.1| C25A1.15 [Caenorhabditis elegans] 3.0E-48
Sequence
Target Sequence 
>C. ELEGANS:181437_AT
tggtgtgagagagaggggcgtgcgcgctttttctatttgtccagtacctcgtcaccaaac
accgttgaggaccgtattattactatgaagagagaaagaaatgaaaagaaattgagagtg
acccccctacatatggtcactggatatttgagagaagaagcaacagatggaattagaggg
gagagactttttaaggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTGTGAGAGAGAGGGGCGTGCGC 438 553 25 Antisense
TGAGAGAGAGGGGCGTGCGCGCTTT 442 567 30 Antisense
CGCTTTTTCTATTTGTCCAGTACCT 56 255 49 Antisense
TTTTTCTATTTGTCCAGTACCTCGT 264 675 52 Antisense
ACCTCGTCACCAAACACCGTTGAGG 264 87 70 Antisense
GTCACCAAACACCGTTGAGGACCGT 572 463 75 Antisense
CACCGTTGAGGACCGTATTATTACT 674 199 84 Antisense
GAGTGACCCCCCTACATATGGTCAC 535 399 140 Antisense
CCCCCTACATATGGTCACTGGATAT 361 261 147 Antisense
ATGGTCACTGGATATTTGAGAGAAG 531 49 157 Antisense
TAGAGGGGAGAGACTTTTTAAGGAT 528 391 198 Antisense
Sequence Source Affymetrix Proprietary Database